miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 52211 0.73 0.163848
Target:  5'- aGUC--GCUCGAGCGCUggccGCCGCCGGc -3'
miRNA:   3'- -CGGgcCGAGCUCGUGGaa--CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 47184 0.73 0.168106
Target:  5'- cGCCCaGCUCGAaacgcgGCugCUUcGCCGCCu- -3'
miRNA:   3'- -CGGGcCGAGCU------CGugGAA-CGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 54907 0.72 0.176472
Target:  5'- cGCCaguucgaCGGCUC--GCACCUgacGCUGCCGGg -3'
miRNA:   3'- -CGG-------GCCGAGcuCGUGGAa--CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 14034 0.72 0.176922
Target:  5'- cGgCCGGagcCUCGGGCGCgggcGCCGCCGGc -3'
miRNA:   3'- -CgGGCC---GAGCUCGUGgaa-CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 13770 0.72 0.176922
Target:  5'- gGCgCCGGCUCGGGCuucACUUcggugGgCGCCGGc -3'
miRNA:   3'- -CG-GGCCGAGCUCG---UGGAa----CgGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 18225 0.72 0.180104
Target:  5'- cGgCCGcaucagguacagcaGCgCGAGCGaauCCUUGCCGCCGGa -3'
miRNA:   3'- -CgGGC--------------CGaGCUCGU---GGAACGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 22402 0.72 0.181482
Target:  5'- uCCCGcGUucgcacugaUCGAGCGCCgccUGCuCGCCGGc -3'
miRNA:   3'- cGGGC-CG---------AGCUCGUGGa--ACG-GCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 3375 0.72 0.181944
Target:  5'- cGCuuGGUUCGcgaucucgaccacguGCGCCaUGCCGCCGa -3'
miRNA:   3'- -CGggCCGAGCu--------------CGUGGaACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 59190 0.72 0.195792
Target:  5'- gGCCCGcugaUgGAGCGCCUUGCgaaGUCGGg -3'
miRNA:   3'- -CGGGCcg--AgCUCGUGGAACGg--CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 33156 0.71 0.211078
Target:  5'- uGUCCGaCgCGGGCACCUUGCCgagcGUCGGc -3'
miRNA:   3'- -CGGGCcGaGCUCGUGGAACGG----CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 29167 0.71 0.211078
Target:  5'- -gCCGGgUCGAGCuuCUUGCCGuuGu -3'
miRNA:   3'- cgGGCCgAGCUCGugGAACGGCggCc -5'
23956 5' -61.9 NC_005262.1 + 18381 0.7 0.233048
Target:  5'- aGCCCGGC-CGAGUuuugcgcggcuGCC-UGCUGCUGc -3'
miRNA:   3'- -CGGGCCGaGCUCG-----------UGGaACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 16970 0.7 0.233048
Target:  5'- aGCCgGGCacCGAuauuGC-CCUgcUGCCGCCGGc -3'
miRNA:   3'- -CGGgCCGa-GCU----CGuGGA--ACGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 689 0.7 0.237084
Target:  5'- -gCCGGCggCGAaagguaguucagcaGCGCCUUGCaCGCCGc -3'
miRNA:   3'- cgGGCCGa-GCU--------------CGUGGAACG-GCGGCc -5'
23956 5' -61.9 NC_005262.1 + 2694 0.7 0.238833
Target:  5'- aGCUCacGCUCGAGCGCCUcaaUGUCGUugCGGu -3'
miRNA:   3'- -CGGGc-CGAGCUCGUGGA---ACGGCG--GCC- -5'
23956 5' -61.9 NC_005262.1 + 16345 0.7 0.238833
Target:  5'- cUCUGGCUCGGcGCGCUgaucggcGCCGCCGc -3'
miRNA:   3'- cGGGCCGAGCU-CGUGGaa-----CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 41662 0.7 0.250762
Target:  5'- uUCCGGC---GGCGCCgucaucGCCGCCGGc -3'
miRNA:   3'- cGGGCCGagcUCGUGGaa----CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 37461 0.7 0.263179
Target:  5'- cGCCCGGCaucagcuccUCGAGCAUC-UGCU-UCGGg -3'
miRNA:   3'- -CGGGCCG---------AGCUCGUGGaACGGcGGCC- -5'
23956 5' -61.9 NC_005262.1 + 3820 0.69 0.268284
Target:  5'- gGCCCGGaggaaggugcCGAGCGCCccgcgcgugacgUGCCGCUGa -3'
miRNA:   3'- -CGGGCCga--------GCUCGUGGa-----------ACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 50600 0.69 0.269572
Target:  5'- aCCCGGUagcgCGAGCGCUUcggcugaaccUGuuGCUGGa -3'
miRNA:   3'- cGGGCCGa---GCUCGUGGA----------ACggCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.