miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23961 3' -61.2 NC_005262.1 + 6120 1.06 0.000582
Target:  5'- gCCGCGCCCGGCGCGCGAGAAGUCGAUc -3'
miRNA:   3'- -GGCGCGGGCCGCGCGCUCUUCAGCUA- -5'
23961 3' -61.2 NC_005262.1 + 40233 0.77 0.083942
Target:  5'- cCUGCGCCCGcGCGCgGCGGGcGGUUGGUc -3'
miRNA:   3'- -GGCGCGGGC-CGCG-CGCUCuUCAGCUA- -5'
23961 3' -61.2 NC_005262.1 + 13686 0.77 0.091039
Target:  5'- aCGCGCgCGGUgcugGCGCGuGAGGUCGAa -3'
miRNA:   3'- gGCGCGgGCCG----CGCGCuCUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 60311 0.77 0.091285
Target:  5'- uCCGCGUCgGGCGCGauccgcaaugggugaGGGAGGUCGAc -3'
miRNA:   3'- -GGCGCGGgCCGCGCg--------------CUCUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 17340 0.75 0.128857
Target:  5'- gCGCGUCgCGGCGaucCGCGAGAAGaUCGAc -3'
miRNA:   3'- gGCGCGG-GCCGC---GCGCUCUUC-AGCUa -5'
23961 3' -61.2 NC_005262.1 + 37878 0.74 0.150839
Target:  5'- gCGCGCCCGGaggcaCGgGCGGGAAGUaUGGUg -3'
miRNA:   3'- gGCGCGGGCC-----GCgCGCUCUUCA-GCUA- -5'
23961 3' -61.2 NC_005262.1 + 28954 0.73 0.163065
Target:  5'- aUGUGCUC-GCGCGCGAGgAAGUCGGg -3'
miRNA:   3'- gGCGCGGGcCGCGCGCUC-UUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 19031 0.73 0.170383
Target:  5'- gCCGCGCgCUGGCGaUGUcgaacugagacuucGAGAAGUCGAg -3'
miRNA:   3'- -GGCGCG-GGCCGC-GCG--------------CUCUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 12811 0.72 0.185429
Target:  5'- gCGCGCagCCGGCGCGUGaAGAAGgagcgCGGc -3'
miRNA:   3'- gGCGCG--GGCCGCGCGC-UCUUCa----GCUa -5'
23961 3' -61.2 NC_005262.1 + 36811 0.72 0.19216
Target:  5'- gCGCGCUCGGCGgGCGuGAGcgaugccauuucuucGUCGGUc -3'
miRNA:   3'- gGCGCGGGCCGCgCGCuCUU---------------CAGCUA- -5'
23961 3' -61.2 NC_005262.1 + 10778 0.72 0.202146
Target:  5'- cCCGCGCCgGGCGCGCGGuacugcugcgCGAg -3'
miRNA:   3'- -GGCGCGGgCCGCGCGCUcuuca-----GCUa -5'
23961 3' -61.2 NC_005262.1 + 39630 0.72 0.205229
Target:  5'- aCCGaCGCCCucGCGCGCGuGAAGgcacUCGAg -3'
miRNA:   3'- -GGC-GCGGGc-CGCGCGCuCUUC----AGCUa -5'
23961 3' -61.2 NC_005262.1 + 46920 0.72 0.205229
Target:  5'- gUGCgGCCCGGCGCGCGgccGGGcgccugcaucAGUUGAUg -3'
miRNA:   3'- gGCG-CGGGCCGCGCGC---UCU----------UCAGCUA- -5'
23961 3' -61.2 NC_005262.1 + 51414 0.72 0.210457
Target:  5'- aCCGCGUgcucggCGGCGCGCGcGAGGgCGAUa -3'
miRNA:   3'- -GGCGCGg-----GCCGCGCGCuCUUCaGCUA- -5'
23961 3' -61.2 NC_005262.1 + 15810 0.72 0.210457
Target:  5'- gCCGgggaaGCUCGGCagggagagGCGCGAGAGGUCGu- -3'
miRNA:   3'- -GGCg----CGGGCCG--------CGCGCUCUUCAGCua -5'
23961 3' -61.2 NC_005262.1 + 24162 0.71 0.215799
Target:  5'- -aGUGCCUucacGCGCGCGAGGGcGUCGGUa -3'
miRNA:   3'- ggCGCGGGc---CGCGCGCUCUU-CAGCUA- -5'
23961 3' -61.2 NC_005262.1 + 30506 0.71 0.221257
Target:  5'- uCgGCGCCCGGCGUGCGcgcGAug-CGGUa -3'
miRNA:   3'- -GgCGCGGGCCGCGCGCu--CUucaGCUA- -5'
23961 3' -61.2 NC_005262.1 + 24740 0.71 0.221257
Target:  5'- gCGCGCgaUCGGCGUGCGGccGAAGUgGAUu -3'
miRNA:   3'- gGCGCG--GGCCGCGCGCU--CUUCAgCUA- -5'
23961 3' -61.2 NC_005262.1 + 46312 0.71 0.226833
Target:  5'- gUCGCGCgCGGCGCGCGcuucguccuGGAAcUCGGc -3'
miRNA:   3'- -GGCGCGgGCCGCGCGC---------UCUUcAGCUa -5'
23961 3' -61.2 NC_005262.1 + 30004 0.71 0.226833
Target:  5'- aCGuUGCCCGcGCGaGCGAuGAGGUCGGUa -3'
miRNA:   3'- gGC-GCGGGC-CGCgCGCU-CUUCAGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.