miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23961 3' -61.2 NC_005262.1 + 15309 0.67 0.398137
Target:  5'- gCCGCGCaUgGGCGgGCG-GccGUCGAg -3'
miRNA:   3'- -GGCGCG-GgCCGCgCGCuCuuCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 48047 0.68 0.332871
Target:  5'- gCCGCGCCCGcaaGCGCGuc-GGUCGc- -3'
miRNA:   3'- -GGCGCGGGCcg-CGCGCucuUCAGCua -5'
23961 3' -61.2 NC_005262.1 + 17491 0.68 0.332871
Target:  5'- gCGCGCgCC-GCGCGCGAcgcGUCGAUc -3'
miRNA:   3'- gGCGCG-GGcCGCGCGCUcuuCAGCUA- -5'
23961 3' -61.2 NC_005262.1 + 18745 0.68 0.348427
Target:  5'- gCGCgGCUCGGCGCGuCGuAGAuGUCGu- -3'
miRNA:   3'- gGCG-CGGGCCGCGC-GC-UCUuCAGCua -5'
23961 3' -61.2 NC_005262.1 + 34494 0.68 0.372719
Target:  5'- uCCGCGCggCGGCGCGCGAcuucugCGAg -3'
miRNA:   3'- -GGCGCGg-GCCGCGCGCUcuuca-GCUa -5'
23961 3' -61.2 NC_005262.1 + 42928 0.67 0.389542
Target:  5'- gUCGuCGUCCGGCGCGCGc---GUCGu- -3'
miRNA:   3'- -GGC-GCGGGCCGCGCGCucuuCAGCua -5'
23961 3' -61.2 NC_005262.1 + 58648 0.67 0.389542
Target:  5'- -aGCgGCCgGGCGCGCGAGuucuaCGAUc -3'
miRNA:   3'- ggCG-CGGgCCGCGCGCUCuuca-GCUA- -5'
23961 3' -61.2 NC_005262.1 + 60872 0.67 0.389542
Target:  5'- aUGCGCgCGaaaGCGCGAuGAAGUCGGc -3'
miRNA:   3'- gGCGCGgGCcg-CGCGCU-CUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 17084 0.67 0.394684
Target:  5'- gCGCGCCCgucgacgcGGCGggcCGCGAGGAGguccaccgcgcggCGAUg -3'
miRNA:   3'- gGCGCGGG--------CCGC---GCGCUCUUCa------------GCUA- -5'
23961 3' -61.2 NC_005262.1 + 57449 0.69 0.303307
Target:  5'- uCCGCggauGCCgCGGCG-GCGAcgaugGAGGUCGAg -3'
miRNA:   3'- -GGCG----CGG-GCCGCgCGCU-----CUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 16995 0.69 0.289299
Target:  5'- gCCGcCGgCCGaGCGCGCGcucgucgugcuGAAGUCGAc -3'
miRNA:   3'- -GGC-GCgGGC-CGCGCGCu----------CUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 58938 0.7 0.262182
Target:  5'- gCGCGCUucucgguCGGCGCGC-AGcAGUCGAa -3'
miRNA:   3'- gGCGCGG-------GCCGCGCGcUCuUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 17340 0.75 0.128857
Target:  5'- gCGCGUCgCGGCGaucCGCGAGAAGaUCGAc -3'
miRNA:   3'- gGCGCGG-GCCGC---GCGCUCUUC-AGCUa -5'
23961 3' -61.2 NC_005262.1 + 37878 0.74 0.150839
Target:  5'- gCGCGCCCGGaggcaCGgGCGGGAAGUaUGGUg -3'
miRNA:   3'- gGCGCGGGCC-----GCgCGCUCUUCA-GCUA- -5'
23961 3' -61.2 NC_005262.1 + 12811 0.72 0.185429
Target:  5'- gCGCGCagCCGGCGCGUGaAGAAGgagcgCGGc -3'
miRNA:   3'- gGCGCG--GGCCGCGCGC-UCUUCa----GCUa -5'
23961 3' -61.2 NC_005262.1 + 10778 0.72 0.202146
Target:  5'- cCCGCGCCgGGCGCGCGGuacugcugcgCGAg -3'
miRNA:   3'- -GGCGCGGgCCGCGCGCUcuuca-----GCUa -5'
23961 3' -61.2 NC_005262.1 + 39630 0.72 0.205229
Target:  5'- aCCGaCGCCCucGCGCGCGuGAAGgcacUCGAg -3'
miRNA:   3'- -GGC-GCGGGc-CGCGCGCuCUUC----AGCUa -5'
23961 3' -61.2 NC_005262.1 + 51414 0.72 0.210457
Target:  5'- aCCGCGUgcucggCGGCGCGCGcGAGGgCGAUa -3'
miRNA:   3'- -GGCGCGg-----GCCGCGCGCuCUUCaGCUA- -5'
23961 3' -61.2 NC_005262.1 + 24740 0.71 0.221257
Target:  5'- gCGCGCgaUCGGCGUGCGGccGAAGUgGAUu -3'
miRNA:   3'- gGCGCG--GGCCGCGCGCU--CUUCAgCUA- -5'
23961 3' -61.2 NC_005262.1 + 10969 0.71 0.244275
Target:  5'- uUCGCGCUguCGGCGCGCcGGGAacgccGGUCGc- -3'
miRNA:   3'- -GGCGCGG--GCCGCGCG-CUCU-----UCAGCua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.