miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23961 3' -61.2 NC_005262.1 + 60 0.67 0.415689
Target:  5'- gCCGgggagGCCgCGGCuCGCGAaGAAGUCGGc -3'
miRNA:   3'- -GGCg----CGG-GCCGcGCGCU-CUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 1691 0.67 0.398137
Target:  5'- uCCGCgacgcgguuGCCgCGGCG-GCGAcgcauGAGGUCGAg -3'
miRNA:   3'- -GGCG---------CGG-GCCGCgCGCU-----CUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 3235 0.7 0.256513
Target:  5'- aCCGCGCcgagcgCCGGCGUcagcgugcccuuGCGGucGAAGUCGAc -3'
miRNA:   3'- -GGCGCG------GGCCGCG------------CGCU--CUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 4412 0.66 0.452169
Target:  5'- gCGCGCCUGcUGCGCGAGcgccugGAGcUCGGc -3'
miRNA:   3'- gGCGCGGGCcGCGCGCUC------UUC-AGCUa -5'
23961 3' -61.2 NC_005262.1 + 6120 1.06 0.000582
Target:  5'- gCCGCGCCCGGCGCGCGAGAAGUCGAUc -3'
miRNA:   3'- -GGCGCGGGCCGCGCGCUCUUCAGCUA- -5'
23961 3' -61.2 NC_005262.1 + 8780 0.71 0.232527
Target:  5'- cCCGCGCcgaCCGcGUGCGCGAGGuacauGUCGc- -3'
miRNA:   3'- -GGCGCG---GGC-CGCGCGCUCUu----CAGCua -5'
23961 3' -61.2 NC_005262.1 + 8874 0.7 0.282488
Target:  5'- aCaCGCCCGGCagcgucagGUGCGAGccGUCGAa -3'
miRNA:   3'- gGcGCGGGCCG--------CGCGCUCuuCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 10778 0.72 0.202146
Target:  5'- cCCGCGCCgGGCGCGCGGuacugcugcgCGAg -3'
miRNA:   3'- -GGCGCGGgCCGCGCGCUcuuca-----GCUa -5'
23961 3' -61.2 NC_005262.1 + 10969 0.71 0.244275
Target:  5'- uUCGCGCUguCGGCGCGCcGGGAacgccGGUCGc- -3'
miRNA:   3'- -GGCGCGG--GCCGCGCG-CUCU-----UCAGCua -5'
23961 3' -61.2 NC_005262.1 + 11471 0.67 0.398137
Target:  5'- aCCGCGCUC-GCGCGCGAGcacauGGGcCGc- -3'
miRNA:   3'- -GGCGCGGGcCGCGCGCUC-----UUCaGCua -5'
23961 3' -61.2 NC_005262.1 + 12480 0.66 0.433706
Target:  5'- gCCGCGCgCGGaUGCGCccaucuGGUCGAg -3'
miRNA:   3'- -GGCGCGgGCC-GCGCGcucu--UCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 12558 0.67 0.381069
Target:  5'- aCCGUagCCGGCGCGCauGAGGAGccCGGUg -3'
miRNA:   3'- -GGCGcgGGCCGCGCG--CUCUUCa-GCUA- -5'
23961 3' -61.2 NC_005262.1 + 12644 0.66 0.490329
Target:  5'- gCGCGCUCGGCgacuucuucacgGCGuCGAGcgccuuGUCGAc -3'
miRNA:   3'- gGCGCGGGCCG------------CGC-GCUCuu----CAGCUa -5'
23961 3' -61.2 NC_005262.1 + 12657 0.67 0.406854
Target:  5'- gCGCGCgCGGCGCGCGGcGAAc----- -3'
miRNA:   3'- gGCGCGgGCCGCGCGCU-CUUcagcua -5'
23961 3' -61.2 NC_005262.1 + 12811 0.72 0.185429
Target:  5'- gCGCGCagCCGGCGCGUGaAGAAGgagcgCGGc -3'
miRNA:   3'- gGCGCG--GGCCGCGCGC-UCUUCa----GCUa -5'
23961 3' -61.2 NC_005262.1 + 13686 0.77 0.091039
Target:  5'- aCGCGCgCGGUgcugGCGCGuGAGGUCGAa -3'
miRNA:   3'- gGCGCGgGCCG----CGCGCuCUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 15309 0.67 0.398137
Target:  5'- gCCGCGCaUgGGCGgGCG-GccGUCGAg -3'
miRNA:   3'- -GGCGCG-GgCCGCgCGCuCuuCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 15810 0.72 0.210457
Target:  5'- gCCGgggaaGCUCGGCagggagagGCGCGAGAGGUCGu- -3'
miRNA:   3'- -GGCg----CGGGCCG--------CGCGCUCUUCAGCua -5'
23961 3' -61.2 NC_005262.1 + 16092 0.68 0.364495
Target:  5'- gCCGcCGCCCGGCGCgGUGcuuGgcGUCa-- -3'
miRNA:   3'- -GGC-GCGGGCCGCG-CGCu--CuuCAGcua -5'
23961 3' -61.2 NC_005262.1 + 16874 0.67 0.42464
Target:  5'- -gGCGCCCGGcCGCGCGccGGGcCGc- -3'
miRNA:   3'- ggCGCGGGCC-GCGCGCucUUCaGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.