miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23968 5' -59.1 NC_005262.1 + 842 1.06 0.000804
Target:  5'- gUGUCGGCCGGAAGCGACGCGCGCAAAu -3'
miRNA:   3'- -ACAGCCGGCCUUCGCUGCGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 10462 0.82 0.043971
Target:  5'- gGUCGGCgaGGuAGCGGCGCGCGCGGu -3'
miRNA:   3'- aCAGCCGg-CCuUCGCUGCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 15578 0.76 0.120564
Target:  5'- gGagGaGCUGGAGGCGcGCGCGCGCGAGg -3'
miRNA:   3'- aCagC-CGGCCUUCGC-UGCGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 17075 0.74 0.169777
Target:  5'- gGUCGuGCCGGAuuGCGccggcuuguccacuGCGCGCGCGGc -3'
miRNA:   3'- aCAGC-CGGCCUu-CGC--------------UGCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 49668 0.74 0.180424
Target:  5'- cGgCGGCauggGGAuggucGGCGGCGCGCGCAAc -3'
miRNA:   3'- aCaGCCGg---CCU-----UCGCUGCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 57220 0.73 0.205625
Target:  5'- gGUCGG-CGGcaucGCGACGCGCGCc-- -3'
miRNA:   3'- aCAGCCgGCCuu--CGCUGCGCGCGuuu -5'
23968 5' -59.1 NC_005262.1 + 47499 0.72 0.22793
Target:  5'- gGUCGaucgguugcacGCCGcGAGCGGCGCGCaGCAAGg -3'
miRNA:   3'- aCAGC-----------CGGCcUUCGCUGCGCG-CGUUU- -5'
23968 5' -59.1 NC_005262.1 + 5058 0.72 0.239832
Target:  5'- -aUCGGCgggcaggcccgCGGcGGCGGCGCGUGCGAc -3'
miRNA:   3'- acAGCCG-----------GCCuUCGCUGCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 11671 0.72 0.245975
Target:  5'- cGcUGGCCGGcaGAGCuuCGCGCGCAAc -3'
miRNA:   3'- aCaGCCGGCC--UUCGcuGCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 52527 0.71 0.258652
Target:  5'- aGUCGGCCGaGGAGaucGCGCugGCGCAGg -3'
miRNA:   3'- aCAGCCGGC-CUUCgc-UGCG--CGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 46646 0.71 0.265189
Target:  5'- uUGcCGGCCuucucGAuuGCGACGCGCGCGu- -3'
miRNA:   3'- -ACaGCCGGc----CUu-CGCUGCGCGCGUuu -5'
23968 5' -59.1 NC_005262.1 + 28687 0.71 0.265189
Target:  5'- gGUCGGCagCGGGaaGGCGACGCcaCGCAGc -3'
miRNA:   3'- aCAGCCG--GCCU--UCGCUGCGc-GCGUUu -5'
23968 5' -59.1 NC_005262.1 + 55508 0.71 0.271858
Target:  5'- -cUUGGCCGccucgcGAGCGACGCGgGCAGc -3'
miRNA:   3'- acAGCCGGCc-----UUCGCUGCGCgCGUUu -5'
23968 5' -59.1 NC_005262.1 + 49173 0.71 0.271858
Target:  5'- -aUCGGCCGc-AGCGGCGCGCacgGCGAu -3'
miRNA:   3'- acAGCCGGCcuUCGCUGCGCG---CGUUu -5'
23968 5' -59.1 NC_005262.1 + 59138 0.71 0.278662
Target:  5'- --cCGGCCGGGccGCGucgcCGCGCGCAu- -3'
miRNA:   3'- acaGCCGGCCUu-CGCu---GCGCGCGUuu -5'
23968 5' -59.1 NC_005262.1 + 48661 0.71 0.2856
Target:  5'- -cUCGacGCCGGccGCGAUGCGUGCAu- -3'
miRNA:   3'- acAGC--CGGCCuuCGCUGCGCGCGUuu -5'
23968 5' -59.1 NC_005262.1 + 55426 0.71 0.2856
Target:  5'- cGcCGGCUGGAGGCGAaacaGgGCaGCGAGa -3'
miRNA:   3'- aCaGCCGGCCUUCGCUg---CgCG-CGUUU- -5'
23968 5' -59.1 NC_005262.1 + 58630 0.71 0.2856
Target:  5'- cGUCaGGCuCGGcagucGAGCGGCcggGCGCGCGAGu -3'
miRNA:   3'- aCAG-CCG-GCC-----UUCGCUG---CGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 44142 0.71 0.2856
Target:  5'- cGUucCGGCCGGA--CG-CGCGCGCGAu -3'
miRNA:   3'- aCA--GCCGGCCUucGCuGCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 41561 0.7 0.299885
Target:  5'- gGcCGGCCGGcguGGGCGGCGCGgcCGUGAGc -3'
miRNA:   3'- aCaGCCGGCC---UUCGCUGCGC--GCGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.