miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23968 5' -59.1 NC_005262.1 + 13581 0.68 0.415068
Target:  5'- -cUCGGCUGGAAGcCGGCGUGguuCGCu-- -3'
miRNA:   3'- acAGCCGGCCUUC-GCUGCGC---GCGuuu -5'
23968 5' -59.1 NC_005262.1 + 49822 0.69 0.337988
Target:  5'- -aUCGGCCGc--GCGAUggaGCGCGCGAAu -3'
miRNA:   3'- acAGCCGGCcuuCGCUG---CGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 35842 0.69 0.354186
Target:  5'- cGUCGGCgccgcgaccgccCaGAuguuugugcgcGGCGACGCGCGCAc- -3'
miRNA:   3'- aCAGCCG------------GcCU-----------UCGCUGCGCGCGUuu -5'
23968 5' -59.1 NC_005262.1 + 32898 0.69 0.362488
Target:  5'- cGUCGGCCaagccGGcGGCGuCGCacGCGCGAc -3'
miRNA:   3'- aCAGCCGG-----CCuUCGCuGCG--CGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 33899 0.69 0.367534
Target:  5'- cGUCGGCCGGcggcccgaucgguAGCGGCG-GUGCcGAg -3'
miRNA:   3'- aCAGCCGGCCu------------UCGCUGCgCGCGuUU- -5'
23968 5' -59.1 NC_005262.1 + 31731 0.69 0.370924
Target:  5'- -uUCGGCCGGcGGuCGcAUGuCGCGCAAGc -3'
miRNA:   3'- acAGCCGGCCuUC-GC-UGC-GCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 46766 0.69 0.379493
Target:  5'- gGUCGuaCaGGcGGCGACGCGCGguAu -3'
miRNA:   3'- aCAGCcgG-CCuUCGCUGCGCGCguUu -5'
23968 5' -59.1 NC_005262.1 + 60860 0.68 0.388194
Target:  5'- --aUGGCC-GAGGCaAUGCGCGCGAAa -3'
miRNA:   3'- acaGCCGGcCUUCGcUGCGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 5902 0.68 0.41233
Target:  5'- aUGUCGGgCGGGAGCGccuucucgaucuccACGCGgaugcCGCGGu -3'
miRNA:   3'- -ACAGCCgGCCUUCGC--------------UGCGC-----GCGUUu -5'
23968 5' -59.1 NC_005262.1 + 30886 0.7 0.307232
Target:  5'- aG-CGGCCGGAuGGUGACGC-CGCu-- -3'
miRNA:   3'- aCaGCCGGCCU-UCGCUGCGcGCGuuu -5'
23968 5' -59.1 NC_005262.1 + 44142 0.71 0.2856
Target:  5'- cGUucCGGCCGGA--CG-CGCGCGCGAu -3'
miRNA:   3'- aCA--GCCGGCCUucGCuGCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 58630 0.71 0.2856
Target:  5'- cGUCaGGCuCGGcagucGAGCGGCcggGCGCGCGAGu -3'
miRNA:   3'- aCAG-CCG-GCC-----UUCGCUG---CGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 49668 0.74 0.180424
Target:  5'- cGgCGGCauggGGAuggucGGCGGCGCGCGCAAc -3'
miRNA:   3'- aCaGCCGg---CCU-----UCGCUGCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 57220 0.73 0.205625
Target:  5'- gGUCGG-CGGcaucGCGACGCGCGCc-- -3'
miRNA:   3'- aCAGCCgGCCuu--CGCUGCGCGCGuuu -5'
23968 5' -59.1 NC_005262.1 + 5058 0.72 0.239832
Target:  5'- -aUCGGCgggcaggcccgCGGcGGCGGCGCGUGCGAc -3'
miRNA:   3'- acAGCCG-----------GCCuUCGCUGCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 11671 0.72 0.245975
Target:  5'- cGcUGGCCGGcaGAGCuuCGCGCGCAAc -3'
miRNA:   3'- aCaGCCGGCC--UUCGcuGCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 52527 0.71 0.258652
Target:  5'- aGUCGGCCGaGGAGaucGCGCugGCGCAGg -3'
miRNA:   3'- aCAGCCGGC-CUUCgc-UGCG--CGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 49173 0.71 0.271858
Target:  5'- -aUCGGCCGc-AGCGGCGCGCacgGCGAu -3'
miRNA:   3'- acAGCCGGCcuUCGCUGCGCG---CGUUu -5'
23968 5' -59.1 NC_005262.1 + 59138 0.71 0.278662
Target:  5'- --cCGGCCGGGccGCGucgcCGCGCGCAu- -3'
miRNA:   3'- acaGCCGGCCUu-CGCu---GCGCGCGUuu -5'
23968 5' -59.1 NC_005262.1 + 55426 0.71 0.2856
Target:  5'- cGcCGGCUGGAGGCGAaacaGgGCaGCGAGa -3'
miRNA:   3'- aCaGCCGGCCUUCGCUg---CgCG-CGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.