miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23968 5' -59.1 NC_005262.1 + 842 1.06 0.000804
Target:  5'- gUGUCGGCCGGAAGCGACGCGCGCAAAu -3'
miRNA:   3'- -ACAGCCGGCCUUCGCUGCGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 1725 0.66 0.501009
Target:  5'- gGUCGagaagcuacGCCgugugcaGGAGGCGAUGCGcCGCAu- -3'
miRNA:   3'- aCAGC---------CGG-------CCUUCGCUGCGC-GCGUuu -5'
23968 5' -59.1 NC_005262.1 + 4149 0.66 0.512189
Target:  5'- uUGUCGGCgaccagCGcGAGGagaGACugGCGCGCGAGg -3'
miRNA:   3'- -ACAGCCG------GC-CUUCg--CUG--CGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 5058 0.72 0.239832
Target:  5'- -aUCGGCgggcaggcccgCGGcGGCGGCGCGUGCGAc -3'
miRNA:   3'- acAGCCG-----------GCCuUCGCUGCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 5173 0.67 0.462291
Target:  5'- gUGaCGGCCGGcgucgcGGGCG-CGgGCGCGGc -3'
miRNA:   3'- -ACaGCCGGCC------UUCGCuGCgCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 5902 0.68 0.41233
Target:  5'- aUGUCGGgCGGGAGCGccuucucgaucuccACGCGgaugcCGCGGu -3'
miRNA:   3'- -ACAGCCgGCCUUCGC--------------UGCGC-----GCGUUu -5'
23968 5' -59.1 NC_005262.1 + 8146 0.68 0.397025
Target:  5'- cGgCGuGCCGGAcGCGGCcacgaGCGCGCGGc -3'
miRNA:   3'- aCaGC-CGGCCUuCGCUG-----CGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 8235 0.66 0.502021
Target:  5'- cUGUCGGCgaagcucGAAGcCGA-GCGCGCGAAa -3'
miRNA:   3'- -ACAGCCGgc-----CUUC-GCUgCGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 9234 0.66 0.532772
Target:  5'- cGUCGGCCGccagucguGAGGgGACGacacgagcaCGCGUGAGg -3'
miRNA:   3'- aCAGCCGGC--------CUUCgCUGC---------GCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 9298 0.67 0.481958
Target:  5'- aUGUCGGUCGGGcccAGCGGCuucggcugcaccGCGaGCAGc -3'
miRNA:   3'- -ACAGCCGGCCU---UCGCUG------------CGCgCGUUu -5'
23968 5' -59.1 NC_005262.1 + 9931 0.67 0.440208
Target:  5'- uUGUCGGCCGGcuuGAGCG-CGaucugcuugccgucCGCGCc-- -3'
miRNA:   3'- -ACAGCCGGCC---UUCGCuGC--------------GCGCGuuu -5'
23968 5' -59.1 NC_005262.1 + 10462 0.82 0.043971
Target:  5'- gGUCGGCgaGGuAGCGGCGCGCGCGGu -3'
miRNA:   3'- aCAGCCGg-CCuUCGCUGCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 11104 0.67 0.446865
Target:  5'- cGUCGGCCGGcggccuuccugcucGAGCugcuucacaagcucGACGaUGCGCAc- -3'
miRNA:   3'- aCAGCCGGCC--------------UUCG--------------CUGC-GCGCGUuu -5'
23968 5' -59.1 NC_005262.1 + 11540 0.66 0.512189
Target:  5'- -cUCGGCCGcucgccggcuGAAGUGcaucACGCGCGCu-- -3'
miRNA:   3'- acAGCCGGC----------CUUCGC----UGCGCGCGuuu -5'
23968 5' -59.1 NC_005262.1 + 11671 0.72 0.245975
Target:  5'- cGcUGGCCGGcaGAGCuuCGCGCGCAAc -3'
miRNA:   3'- aCaGCCGGCC--UUCGcuGCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 11819 0.66 0.532772
Target:  5'- aGUUGcgaaCCGGAcaguuucgAGCGcagGCGCGCGCGAGc -3'
miRNA:   3'- aCAGCc---GGCCU--------UCGC---UGCGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 13526 0.68 0.424277
Target:  5'- -cUCGGCCGGc-GCGG-GCGCGCc-- -3'
miRNA:   3'- acAGCCGGCCuuCGCUgCGCGCGuuu -5'
23968 5' -59.1 NC_005262.1 + 13581 0.68 0.415068
Target:  5'- -cUCGGCUGGAAGcCGGCGUGguuCGCu-- -3'
miRNA:   3'- acAGCCGGCCUUC-GCUGCGC---GCGuuu -5'
23968 5' -59.1 NC_005262.1 + 14032 0.67 0.462291
Target:  5'- aG-CGGCCGG-AGCcucgGGCGCGgGCGc- -3'
miRNA:   3'- aCaGCCGGCCuUCG----CUGCGCgCGUuu -5'
23968 5' -59.1 NC_005262.1 + 14264 0.66 0.522442
Target:  5'- cGcCGGagaCGGAAGUGGCaaaGCGCGAAc -3'
miRNA:   3'- aCaGCCg--GCCUUCGCUGcg-CGCGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.