miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23969 5' -58.5 NC_005262.1 + 128 1.08 0.0006
Target:  5'- cGUCGCCGUCGCCGGCAAUUCCAGCCAg -3'
miRNA:   3'- -CAGCGGCAGCGGCCGUUAAGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 35796 0.8 0.070964
Target:  5'- cUCGCCGUCGuucucguccugcaCCuGCGAUUCCAGCCAg -3'
miRNA:   3'- cAGCGGCAGC-------------GGcCGUUAAGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 33735 0.78 0.099452
Target:  5'- cGUCGUCGUCGCCGGCAGcaucgUCGGUCu -3'
miRNA:   3'- -CAGCGGCAGCGGCCGUUaa---GGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 42168 0.76 0.130833
Target:  5'- cGUCGCCGUCGCCGucGCAc-UCCGGgCAg -3'
miRNA:   3'- -CAGCGGCAGCGGC--CGUuaAGGUCgGU- -5'
23969 5' -58.5 NC_005262.1 + 18560 0.75 0.171133
Target:  5'- gGUCGCCGagUUGCCGGCG-UUCaGGCCGa -3'
miRNA:   3'- -CAGCGGC--AGCGGCCGUuAAGgUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 18179 0.73 0.211018
Target:  5'- --aGCUGUCGCCGGUg--UCgAGCCAg -3'
miRNA:   3'- cagCGGCAGCGGCCGuuaAGgUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 22121 0.73 0.233817
Target:  5'- -cUGCaCGUgGCCGGCAAUcgUCUGGCCGc -3'
miRNA:   3'- caGCG-GCAgCGGCCGUUA--AGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 63567 0.72 0.245975
Target:  5'- -cCGCCGcCGCCGGCGGUagcgugucuggcUCC-GCCGc -3'
miRNA:   3'- caGCGGCaGCGGCCGUUA------------AGGuCGGU- -5'
23969 5' -58.5 NC_005262.1 + 13899 0.72 0.245975
Target:  5'- -cCGUCGUCGCCGaCGAcaaucugaccguUUCCGGCCGg -3'
miRNA:   3'- caGCGGCAGCGGCcGUU------------AAGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 49475 0.72 0.271858
Target:  5'- uUCGCCGcccaGCuCGGCGGUUCC-GCCGc -3'
miRNA:   3'- cAGCGGCag--CG-GCCGUUAAGGuCGGU- -5'
23969 5' -58.5 NC_005262.1 + 56158 0.71 0.292675
Target:  5'- -cCGUCGcCGCCGGCGucgacaUUCGGCCAa -3'
miRNA:   3'- caGCGGCaGCGGCCGUua----AGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 28541 0.71 0.292675
Target:  5'- -gUGCCGuUCGCCGGgGGcgcCCAGCCGc -3'
miRNA:   3'- caGCGGC-AGCGGCCgUUaa-GGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 25358 0.71 0.312456
Target:  5'- -gUGCCGUCGuCCGGCGugaucucgaccgcgCCGGCCu -3'
miRNA:   3'- caGCGGCAGC-GGCCGUuaa-----------GGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 15875 0.7 0.329312
Target:  5'- uGUCGCCGgCGCuCGGCGucugcaaaaacaaAUUCUuAGCCAc -3'
miRNA:   3'- -CAGCGGCaGCG-GCCGU-------------UAAGG-UCGGU- -5'
23969 5' -58.5 NC_005262.1 + 12790 0.7 0.337988
Target:  5'- -gCGCgGUCGCCGGuCGcUUCCuuGGCCu -3'
miRNA:   3'- caGCGgCAGCGGCC-GUuAAGG--UCGGu -5'
23969 5' -58.5 NC_005262.1 + 58980 0.7 0.346019
Target:  5'- -gCGUCG-CGCCGGCGAaaCCAGCg- -3'
miRNA:   3'- caGCGGCaGCGGCCGUUaaGGUCGgu -5'
23969 5' -58.5 NC_005262.1 + 13158 0.7 0.346019
Target:  5'- gGUUGCUGcUCGgCGGCGAcauUUCCAGCa- -3'
miRNA:   3'- -CAGCGGC-AGCgGCCGUU---AAGGUCGgu -5'
23969 5' -58.5 NC_005262.1 + 63651 0.7 0.354186
Target:  5'- uGUCGCUGUCuCCGGCGAcgcUUUCuGCUAu -3'
miRNA:   3'- -CAGCGGCAGcGGCCGUU---AAGGuCGGU- -5'
23969 5' -58.5 NC_005262.1 + 53256 0.7 0.354186
Target:  5'- --gGCCGgucgCGUCGGCAuagccGUUUCGGCCGc -3'
miRNA:   3'- cagCGGCa---GCGGCCGU-----UAAGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 6732 0.7 0.354186
Target:  5'- cUCGCCGaUCuGCuCGGCGGUaUCAGCCu -3'
miRNA:   3'- cAGCGGC-AG-CG-GCCGUUAaGGUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.