miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23969 5' -58.5 NC_005262.1 + 128 1.08 0.0006
Target:  5'- cGUCGCCGUCGCCGGCAAUUCCAGCCAg -3'
miRNA:   3'- -CAGCGGCAGCGGCCGUUAAGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 975 0.66 0.574751
Target:  5'- cGUgGCCGaUCGUCGGCAcgUC--GCCu -3'
miRNA:   3'- -CAgCGGC-AGCGGCCGUuaAGguCGGu -5'
23969 5' -58.5 NC_005262.1 + 2347 0.66 0.547355
Target:  5'- uUCGCCGUcCGCCGccuucuucgcgacguGgAAUUCCucGGCCGc -3'
miRNA:   3'- cAGCGGCA-GCGGC---------------CgUUAAGG--UCGGU- -5'
23969 5' -58.5 NC_005262.1 + 3238 0.67 0.481958
Target:  5'- -gCGCCGagCGCCGGCGucagCguGCCc -3'
miRNA:   3'- caGCGGCa-GCGGCCGUuaa-GguCGGu -5'
23969 5' -58.5 NC_005262.1 + 3588 0.68 0.452617
Target:  5'- cUUGCCGaccUCGCCGGCcggcUCCuuGCCGg -3'
miRNA:   3'- cAGCGGC---AGCGGCCGuua-AGGu-CGGU- -5'
23969 5' -58.5 NC_005262.1 + 3675 0.67 0.502021
Target:  5'- --gGCCGUCGCUGGCcgugacgacgguGAUgCCGGCg- -3'
miRNA:   3'- cagCGGCAGCGGCCG------------UUAaGGUCGgu -5'
23969 5' -58.5 NC_005262.1 + 4954 0.67 0.533809
Target:  5'- cGUCGCCGaucugcgugccgaagCGCCGcaGCAg--CCAGCCu -3'
miRNA:   3'- -CAGCGGCa--------------GCGGC--CGUuaaGGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 6589 0.67 0.491942
Target:  5'- -aUGCCGcCGaCCGGCAggUCCgGGUCGa -3'
miRNA:   3'- caGCGGCaGC-GGCCGUuaAGG-UCGGU- -5'
23969 5' -58.5 NC_005262.1 + 6732 0.7 0.354186
Target:  5'- cUCGCCGaUCuGCuCGGCGGUaUCAGCCu -3'
miRNA:   3'- cAGCGGC-AG-CG-GCCGUUAaGGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 9257 0.66 0.553644
Target:  5'- cGUCGCUG--GCCGGaaucCAAUUCUGGCCc -3'
miRNA:   3'- -CAGCGGCagCGGCC----GUUAAGGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 10976 0.67 0.522442
Target:  5'- uGUCGgCG-CGCCGGgAAcgCCGGUCGc -3'
miRNA:   3'- -CAGCgGCaGCGGCCgUUaaGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 11039 0.66 0.574751
Target:  5'- -aUGCCGuucgcgaucUCGCUGGCGcc-CCAGCCc -3'
miRNA:   3'- caGCGGC---------AGCGGCCGUuaaGGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 11100 0.66 0.585376
Target:  5'- -cCGgCGUCgGCCGGCGGccUUCCuGCUc -3'
miRNA:   3'- caGCgGCAG-CGGCCGUU--AAGGuCGGu -5'
23969 5' -58.5 NC_005262.1 + 12674 0.66 0.564171
Target:  5'- -gCGCCuuGUCGaCCGGCGcgUCgAGCaCGa -3'
miRNA:   3'- caGCGG--CAGC-GGCCGUuaAGgUCG-GU- -5'
23969 5' -58.5 NC_005262.1 + 12790 0.7 0.337988
Target:  5'- -gCGCgGUCGCCGGuCGcUUCCuuGGCCu -3'
miRNA:   3'- caGCGgCAGCGGCC-GUuAAGG--UCGGu -5'
23969 5' -58.5 NC_005262.1 + 13158 0.7 0.346019
Target:  5'- gGUUGCUGcUCGgCGGCGAcauUUCCAGCa- -3'
miRNA:   3'- -CAGCGGC-AGCgGCCGUU---AAGGUCGgu -5'
23969 5' -58.5 NC_005262.1 + 13401 0.68 0.472072
Target:  5'- -gCGCUGaUCGCCGcGCGGUUCgCGucGCCAc -3'
miRNA:   3'- caGCGGC-AGCGGC-CGUUAAG-GU--CGGU- -5'
23969 5' -58.5 NC_005262.1 + 13740 0.68 0.472072
Target:  5'- -aCGCCGU-GCCaGGCA--UUCAGCCu -3'
miRNA:   3'- caGCGGCAgCGG-CCGUuaAGGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 13899 0.72 0.245975
Target:  5'- -cCGUCGUCGCCGaCGAcaaucugaccguUUCCGGCCGg -3'
miRNA:   3'- caGCGGCAGCGGCcGUU------------AAGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 14515 0.69 0.379493
Target:  5'- cUCGgaCGUCGCCaGCAcUUCCGGCUu -3'
miRNA:   3'- cAGCg-GCAGCGGcCGUuAAGGUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.