miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23969 5' -58.5 NC_005262.1 + 50444 0.67 0.532772
Target:  5'- cGUCGUCGU-GCCGcGCGAggaggaCGGCCGc -3'
miRNA:   3'- -CAGCGGCAgCGGC-CGUUaag---GUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 3675 0.67 0.502021
Target:  5'- --gGCCGUCGCUGGCcgugacgacgguGAUgCCGGCg- -3'
miRNA:   3'- cagCGGCAGCGGCCG------------UUAaGGUCGgu -5'
23969 5' -58.5 NC_005262.1 + 24884 0.67 0.502021
Target:  5'- -cCGCCGgCGCgugacaGGCGAgcucggCCAGCCGg -3'
miRNA:   3'- caGCGGCaGCGg-----CCGUUaa----GGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 54628 0.67 0.512189
Target:  5'- cUCGUgGUcCGCCGaGCAGU-CCGGCUc -3'
miRNA:   3'- cAGCGgCA-GCGGC-CGUUAaGGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 27375 0.67 0.522442
Target:  5'- --gGCCGUCGUCGGCGccUCC-GCgAa -3'
miRNA:   3'- cagCGGCAGCGGCCGUuaAGGuCGgU- -5'
23969 5' -58.5 NC_005262.1 + 10976 0.67 0.522442
Target:  5'- uGUCGgCG-CGCCGGgAAcgCCGGUCGc -3'
miRNA:   3'- -CAGCgGCaGCGGCCgUUaaGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 19603 0.67 0.531736
Target:  5'- cGUCGCCuUCggugcgaguggcgGUCGGCG--UCCAGCCc -3'
miRNA:   3'- -CAGCGGcAG-------------CGGCCGUuaAGGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 20458 0.67 0.532772
Target:  5'- cGUCGCCG-CGUgGGCuGUUCC-GCa- -3'
miRNA:   3'- -CAGCGGCaGCGgCCGuUAAGGuCGgu -5'
23969 5' -58.5 NC_005262.1 + 43843 0.67 0.532772
Target:  5'- --gGCCG-CGCgCGGCGGUgcgCCGGCa- -3'
miRNA:   3'- cagCGGCaGCG-GCCGUUAa--GGUCGgu -5'
23969 5' -58.5 NC_005262.1 + 53776 0.67 0.502021
Target:  5'- --gGCUGUaCGUCGGCGAUaCCGGCa- -3'
miRNA:   3'- cagCGGCA-GCGGCCGUUAaGGUCGgu -5'
23969 5' -58.5 NC_005262.1 + 59355 0.67 0.491942
Target:  5'- aUCGCaaaGUaCGCCGGCAAcgCCgAGCUc -3'
miRNA:   3'- cAGCGg--CA-GCGGCCGUUaaGG-UCGGu -5'
23969 5' -58.5 NC_005262.1 + 41670 0.67 0.491942
Target:  5'- -gCGCCGUcaucgcCGCCGGCA---CCGGCa- -3'
miRNA:   3'- caGCGGCA------GCGGCCGUuaaGGUCGgu -5'
23969 5' -58.5 NC_005262.1 + 63567 0.72 0.245975
Target:  5'- -cCGCCGcCGCCGGCGGUagcgugucuggcUCC-GCCGc -3'
miRNA:   3'- caGCGGCaGCGGCCGUUA------------AGGuCGGU- -5'
23969 5' -58.5 NC_005262.1 + 34164 0.7 0.362488
Target:  5'- --gGCCGUCGCCGGCAcgaa-GGUCGa -3'
miRNA:   3'- cagCGGCAGCGGCCGUuaaggUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 30144 0.69 0.379493
Target:  5'- gGUCGCCGaagCGCCGGCGGau---GCCGa -3'
miRNA:   3'- -CAGCGGCa--GCGGCCGUUaagguCGGU- -5'
23969 5' -58.5 NC_005262.1 + 33675 0.69 0.387318
Target:  5'- gGUCGCCG-CGUacacggccaaauuCGGCAAggucCCGGCCGc -3'
miRNA:   3'- -CAGCGGCaGCG-------------GCCGUUaa--GGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 39192 0.69 0.388194
Target:  5'- aUCGuCUGggaUGCCGGCAAcuucgaUCCGGCCAg -3'
miRNA:   3'- cAGC-GGCa--GCGGCCGUUa-----AGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 55653 0.69 0.415068
Target:  5'- cGUgGCCG-CGuCCGGCAcg-CCGGUCAc -3'
miRNA:   3'- -CAgCGGCaGC-GGCCGUuaaGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 32773 0.68 0.433606
Target:  5'- aUCGCCGacaagcUCGacaCCGGCGGcgcgCCGGCCAu -3'
miRNA:   3'- cAGCGGC------AGC---GGCCGUUaa--GGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 13740 0.68 0.472072
Target:  5'- -aCGCCGU-GCCaGGCA--UUCAGCCu -3'
miRNA:   3'- caGCGGCAgCGG-CCGUuaAGGUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.