miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23994 3' -55.3 NC_005262.1 + 15850 1.11 0.000845
Target:  5'- uGAUGCGGCACUCGACGGCCAUGUACCu -3'
miRNA:   3'- -CUACGCCGUGAGCUGCCGGUACAUGG- -5'
23994 3' -55.3 NC_005262.1 + 57383 0.8 0.135556
Target:  5'- cGAUGCGGCGCUCGuucugcugcacGCGGgCCGUGaGCUg -3'
miRNA:   3'- -CUACGCCGUGAGC-----------UGCC-GGUACaUGG- -5'
23994 3' -55.3 NC_005262.1 + 27078 0.79 0.159683
Target:  5'- aGUGCGGCgcGCUCGGCGGgCGUGagcgaUGCCa -3'
miRNA:   3'- cUACGCCG--UGAGCUGCCgGUAC-----AUGG- -5'
23994 3' -55.3 NC_005262.1 + 57802 0.73 0.336638
Target:  5'- cAUGCGGCGCgcgucgUGGCGGCC---UACCg -3'
miRNA:   3'- cUACGCCGUGa-----GCUGCCGGuacAUGG- -5'
23994 3' -55.3 NC_005262.1 + 22229 0.73 0.361443
Target:  5'- cGAUGCGGgcaGCcgCGGCGGCCAgacgauUGCCg -3'
miRNA:   3'- -CUACGCCg--UGa-GCUGCCGGUac----AUGG- -5'
23994 3' -55.3 NC_005262.1 + 46772 0.73 0.361443
Target:  5'- --cGCGGCGCugacugcaUCGGCGGgCGUcgGUGCCg -3'
miRNA:   3'- cuaCGCCGUG--------AGCUGCCgGUA--CAUGG- -5'
23994 3' -55.3 NC_005262.1 + 21406 0.73 0.378672
Target:  5'- -uUGCGGCACUgguccgagcucgCGACGGCCGacGU-CCg -3'
miRNA:   3'- cuACGCCGUGA------------GCUGCCGGUa-CAuGG- -5'
23994 3' -55.3 NC_005262.1 + 43912 0.72 0.414745
Target:  5'- --cGCGGCcgGCcCG-CGGCCGUGUcGCCg -3'
miRNA:   3'- cuaCGCCG--UGaGCuGCCGGUACA-UGG- -5'
23994 3' -55.3 NC_005262.1 + 9520 0.72 0.424087
Target:  5'- aAUGCGGgcuucgcaccCGCUCGcCGGCuUGUGUACCg -3'
miRNA:   3'- cUACGCC----------GUGAGCuGCCG-GUACAUGG- -5'
23994 3' -55.3 NC_005262.1 + 54519 0.71 0.433554
Target:  5'- cGGU-CGGCGCgcgCGGCGGCC-UGcGCCu -3'
miRNA:   3'- -CUAcGCCGUGa--GCUGCCGGuACaUGG- -5'
23994 3' -55.3 NC_005262.1 + 25032 0.71 0.443143
Target:  5'- --aGCugGGCGCgccgCG-CGGCCAUGUGCg -3'
miRNA:   3'- cuaCG--CCGUGa---GCuGCCGGUACAUGg -5'
23994 3' -55.3 NC_005262.1 + 2300 0.71 0.452851
Target:  5'- --aGCGGC-UUCGAC-GCgAUGUGCCg -3'
miRNA:   3'- cuaCGCCGuGAGCUGcCGgUACAUGG- -5'
23994 3' -55.3 NC_005262.1 + 11585 0.71 0.452851
Target:  5'- cGAUGCaGCcgaGCUCGgcgacGCGGcCCAUGUGCUc -3'
miRNA:   3'- -CUACGcCG---UGAGC-----UGCC-GGUACAUGG- -5'
23994 3' -55.3 NC_005262.1 + 61239 0.71 0.462673
Target:  5'- cGUGUGGCGCaccuacacCGGCGGCC-UGgGCCa -3'
miRNA:   3'- cUACGCCGUGa-------GCUGCCGGuACaUGG- -5'
23994 3' -55.3 NC_005262.1 + 12562 0.71 0.462673
Target:  5'- cGcgGCGGCGCUCGuCGaGCUGcUGcUGCCg -3'
miRNA:   3'- -CuaCGCCGUGAGCuGC-CGGU-AC-AUGG- -5'
23994 3' -55.3 NC_005262.1 + 55477 0.71 0.472606
Target:  5'- cGAUGCGGCGCUCGAUcugcuuGCgCGUGauCCg -3'
miRNA:   3'- -CUACGCCGUGAGCUGc-----CG-GUACauGG- -5'
23994 3' -55.3 NC_005262.1 + 36094 0.71 0.482645
Target:  5'- uGAUGCgacGGCACUCGcGCGGCaCGUGgaacGCa -3'
miRNA:   3'- -CUACG---CCGUGAGC-UGCCG-GUACa---UGg -5'
23994 3' -55.3 NC_005262.1 + 30203 0.71 0.48669
Target:  5'- --aGCGGCACgaucgugggcuucgCGGCGGCCggcGUGUcgucGCCc -3'
miRNA:   3'- cuaCGCCGUGa-------------GCUGCCGG---UACA----UGG- -5'
23994 3' -55.3 NC_005262.1 + 5865 0.7 0.492786
Target:  5'- --cGCGGCGCaaGAUGGCC-UGUuuCCg -3'
miRNA:   3'- cuaCGCCGUGagCUGCCGGuACAu-GG- -5'
23994 3' -55.3 NC_005262.1 + 17383 0.7 0.492786
Target:  5'- -cUGcCGGUcgACUCGGCGGCCGacaaUGCCg -3'
miRNA:   3'- cuAC-GCCG--UGAGCUGCCGGUac--AUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.