miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23994 3' -55.3 NC_005262.1 + 24 0.67 0.717426
Target:  5'- --gGCGGCG-UCGAUGGCaugcuccaGUGCCu -3'
miRNA:   3'- cuaCGCCGUgAGCUGCCGgua-----CAUGG- -5'
23994 3' -55.3 NC_005262.1 + 1974 0.69 0.576911
Target:  5'- aGAUGCGGCAUgccgUGuuGGCaugGUGUGCUc -3'
miRNA:   3'- -CUACGCCGUGa---GCugCCGg--UACAUGG- -5'
23994 3' -55.3 NC_005262.1 + 2300 0.71 0.452851
Target:  5'- --aGCGGC-UUCGAC-GCgAUGUGCCg -3'
miRNA:   3'- cuaCGCCGuGAGCUGcCGgUACAUGG- -5'
23994 3' -55.3 NC_005262.1 + 3805 0.68 0.609388
Target:  5'- ---cCGGCcaucCUCGACGGCCcggaggaagGUGCCg -3'
miRNA:   3'- cuacGCCGu---GAGCUGCCGGua-------CAUGG- -5'
23994 3' -55.3 NC_005262.1 + 3910 0.66 0.778958
Target:  5'- --cGgGGCGCUCGGCaccuuccuccgGGCCGUcgaGgaugGCCg -3'
miRNA:   3'- cuaCgCCGUGAGCUG-----------CCGGUA---Ca---UGG- -5'
23994 3' -55.3 NC_005262.1 + 5029 0.69 0.555469
Target:  5'- --aGCGGCaguuGCUCGcCGGCCGgc-GCCu -3'
miRNA:   3'- cuaCGCCG----UGAGCuGCCGGUacaUGG- -5'
23994 3' -55.3 NC_005262.1 + 5076 0.68 0.620264
Target:  5'- gGcgGCGGCGCgugCGAcCGGCuCGgcgGUGCg -3'
miRNA:   3'- -CuaCGCCGUGa--GCU-GCCG-GUa--CAUGg -5'
23994 3' -55.3 NC_005262.1 + 5865 0.7 0.492786
Target:  5'- --cGCGGCGCaaGAUGGCC-UGUuuCCg -3'
miRNA:   3'- cuaCGCCGUGagCUGCCGGuACAu-GG- -5'
23994 3' -55.3 NC_005262.1 + 8274 0.66 0.778958
Target:  5'- -cUGCGGCGCcuucCGGCGuGCUgAUGU-CCa -3'
miRNA:   3'- cuACGCCGUGa---GCUGC-CGG-UACAuGG- -5'
23994 3' -55.3 NC_005262.1 + 9457 0.67 0.685395
Target:  5'- uGUGCGGCACcaUCcugcACGGUaugGUGCCg -3'
miRNA:   3'- cUACGCCGUG--AGc---UGCCGguaCAUGG- -5'
23994 3' -55.3 NC_005262.1 + 9520 0.72 0.424087
Target:  5'- aAUGCGGgcuucgcaccCGCUCGcCGGCuUGUGUACCg -3'
miRNA:   3'- cUACGCC----------GUGAGCuGCCG-GUACAUGG- -5'
23994 3' -55.3 NC_005262.1 + 10855 0.66 0.738385
Target:  5'- gGggGCGGCAUgagUGAgGGCgCGguaauggGUGCCa -3'
miRNA:   3'- -CuaCGCCGUGa--GCUgCCG-GUa------CAUGG- -5'
23994 3' -55.3 NC_005262.1 + 11517 0.68 0.652915
Target:  5'- --cGCGGCGugucgcgcaccUUCGGCGGCCcgGcGCg -3'
miRNA:   3'- cuaCGCCGU-----------GAGCUGCCGGuaCaUGg -5'
23994 3' -55.3 NC_005262.1 + 11585 0.71 0.452851
Target:  5'- cGAUGCaGCcgaGCUCGgcgacGCGGcCCAUGUGCUc -3'
miRNA:   3'- -CUACGcCG---UGAGC-----UGCC-GGUACAUGG- -5'
23994 3' -55.3 NC_005262.1 + 12245 0.69 0.587703
Target:  5'- cAUGCGGuCGCgUCGAUGGUCggGcACCu -3'
miRNA:   3'- cUACGCC-GUG-AGCUGCCGGuaCaUGG- -5'
23994 3' -55.3 NC_005262.1 + 12562 0.71 0.462673
Target:  5'- cGcgGCGGCGCUCGuCGaGCUGcUGcUGCCg -3'
miRNA:   3'- -CuaCGCCGUGAGCuGC-CGGU-AC-AUGG- -5'
23994 3' -55.3 NC_005262.1 + 12838 0.68 0.609388
Target:  5'- --cGCGGC-CUCG-CGGgaaCCGUcGUGCCg -3'
miRNA:   3'- cuaCGCCGuGAGCuGCC---GGUA-CAUGG- -5'
23994 3' -55.3 NC_005262.1 + 13225 0.7 0.534264
Target:  5'- --cGCaGCGCgcgCGGCGGaCCuaauUGUGCCa -3'
miRNA:   3'- cuaCGcCGUGa--GCUGCC-GGu---ACAUGG- -5'
23994 3' -55.3 NC_005262.1 + 13829 0.66 0.765999
Target:  5'- cGAUGCaauugaccauguucGGCgACUCGAUGGCgCAgcaccgGCCg -3'
miRNA:   3'- -CUACG--------------CCG-UGAGCUGCCG-GUaca---UGG- -5'
23994 3' -55.3 NC_005262.1 + 14211 0.7 0.534264
Target:  5'- --cGCGGCACUgaCGGCGGgCGcgaUGUcgACCa -3'
miRNA:   3'- cuaCGCCGUGA--GCUGCCgGU---ACA--UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.