miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23994 3' -55.3 NC_005262.1 + 36621 0.68 0.652915
Target:  5'- aAUGCGGUucgguuGCUgGAUGgcGCCAUGUccGCCg -3'
miRNA:   3'- cUACGCCG------UGAgCUGC--CGGUACA--UGG- -5'
23994 3' -55.3 NC_005262.1 + 49832 0.69 0.598532
Target:  5'- cGAUG-GaGCGCgCGaAUGGCCcgGUGCCg -3'
miRNA:   3'- -CUACgC-CGUGaGC-UGCCGGuaCAUGG- -5'
23994 3' -55.3 NC_005262.1 + 12838 0.68 0.609388
Target:  5'- --cGCGGC-CUCG-CGGgaaCCGUcGUGCCg -3'
miRNA:   3'- cuaCGCCGuGAGCuGCC---GGUA-CAUGG- -5'
23994 3' -55.3 NC_005262.1 + 28165 0.68 0.609388
Target:  5'- --cGCGGCGCaacugcgcgCGGCGGCCGUcgACa -3'
miRNA:   3'- cuaCGCCGUGa--------GCUGCCGGUAcaUGg -5'
23994 3' -55.3 NC_005262.1 + 49723 0.68 0.609388
Target:  5'- --gGCGGCGaacCGGCGGCCGaa-GCCg -3'
miRNA:   3'- cuaCGCCGUga-GCUGCCGGUacaUGG- -5'
23994 3' -55.3 NC_005262.1 + 3805 0.68 0.609388
Target:  5'- ---cCGGCcaucCUCGACGGCCcggaggaagGUGCCg -3'
miRNA:   3'- cuacGCCGu---GAGCUGCCGGua-------CAUGG- -5'
23994 3' -55.3 NC_005262.1 + 5076 0.68 0.620264
Target:  5'- gGcgGCGGCGCgugCGAcCGGCuCGgcgGUGCg -3'
miRNA:   3'- -CuaCGCCGUGa--GCU-GCCG-GUa--CAUGg -5'
23994 3' -55.3 NC_005262.1 + 24343 0.68 0.63115
Target:  5'- cAUGCGGCucuGCgUCGGCGcGCC-UGaUACCu -3'
miRNA:   3'- cUACGCCG---UG-AGCUGC-CGGuAC-AUGG- -5'
23994 3' -55.3 NC_005262.1 + 49687 0.68 0.632239
Target:  5'- --gGCGGCGCgcgcaaccugaaccgCGACGGC---GUGCCg -3'
miRNA:   3'- cuaCGCCGUGa--------------GCUGCCGguaCAUGG- -5'
23994 3' -55.3 NC_005262.1 + 12245 0.69 0.587703
Target:  5'- cAUGCGGuCGCgUCGAUGGUCggGcACCu -3'
miRNA:   3'- cUACGCC-GUG-AGCUGCCGGuaCaUGG- -5'
23994 3' -55.3 NC_005262.1 + 1974 0.69 0.576911
Target:  5'- aGAUGCGGCAUgccgUGuuGGCaugGUGUGCUc -3'
miRNA:   3'- -CUACGCCGUGa---GCugCCGg--UACAUGG- -5'
23994 3' -55.3 NC_005262.1 + 27196 0.69 0.555469
Target:  5'- uGUGUGGCACUau-CGGCCGcGUuCCg -3'
miRNA:   3'- cUACGCCGUGAgcuGCCGGUaCAuGG- -5'
23994 3' -55.3 NC_005262.1 + 21406 0.73 0.378672
Target:  5'- -uUGCGGCACUgguccgagcucgCGACGGCCGacGU-CCg -3'
miRNA:   3'- cuACGCCGUGA------------GCUGCCGGUa-CAuGG- -5'
23994 3' -55.3 NC_005262.1 + 12562 0.71 0.462673
Target:  5'- cGcgGCGGCGCUCGuCGaGCUGcUGcUGCCg -3'
miRNA:   3'- -CuaCGCCGUGAGCuGC-CGGU-AC-AUGG- -5'
23994 3' -55.3 NC_005262.1 + 61239 0.71 0.462673
Target:  5'- cGUGUGGCGCaccuacacCGGCGGCC-UGgGCCa -3'
miRNA:   3'- cUACGCCGUGa-------GCUGCCGGuACaUGG- -5'
23994 3' -55.3 NC_005262.1 + 17383 0.7 0.492786
Target:  5'- -cUGcCGGUcgACUCGGCGGCCGacaaUGCCg -3'
miRNA:   3'- cuAC-GCCG--UGAGCUGCCGGUac--AUGG- -5'
23994 3' -55.3 NC_005262.1 + 54991 0.7 0.523769
Target:  5'- --cGCGGCAUUCagGAaGGCgaCAUGUACCu -3'
miRNA:   3'- cuaCGCCGUGAG--CUgCCG--GUACAUGG- -5'
23994 3' -55.3 NC_005262.1 + 14211 0.7 0.534264
Target:  5'- --cGCGGCACUgaCGGCGGgCGcgaUGUcgACCa -3'
miRNA:   3'- cuaCGCCGUGA--GCUGCCgGU---ACA--UGG- -5'
23994 3' -55.3 NC_005262.1 + 40367 0.69 0.544833
Target:  5'- cGAUcGuCGGCgACgUCGACGGCC-UGUcuGCCg -3'
miRNA:   3'- -CUA-C-GCCG-UG-AGCUGCCGGuACA--UGG- -5'
23994 3' -55.3 NC_005262.1 + 5029 0.69 0.555469
Target:  5'- --aGCGGCaguuGCUCGcCGGCCGgc-GCCu -3'
miRNA:   3'- cuaCGCCG----UGAGCuGCCGGUacaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.