Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23995 | 3' | -47.9 | NC_005262.1 | + | 17545 | 0.71 | 0.896864 |
Target: 5'- gCGGUCGcGcgCGAGG-CggCAGCCGCg -3' miRNA: 3'- -GCUAGCaCaaGCUCUaGuaGUUGGCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 18643 | 0.71 | 0.910697 |
Target: 5'- aCGG-CGUcg-CGaAGGUCAUCAACCGUg -3' miRNA: 3'- -GCUaGCAcaaGC-UCUAGUAGUUGGCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 10304 | 0.7 | 0.917183 |
Target: 5'- uCGGUCGUcg-CGAGAcggaugUUcgCAACCGCg -3' miRNA: 3'- -GCUAGCAcaaGCUCU------AGuaGUUGGCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 14855 | 0.7 | 0.923378 |
Target: 5'- aCGGUCGagcucGUUCGAGAUgG-CAAgCGCa -3' miRNA: 3'- -GCUAGCa----CAAGCUCUAgUaGUUgGCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 36242 | 0.7 | 0.940214 |
Target: 5'- aCGAUC-UGcUCGAGcUgGUCGAUCGCg -3' miRNA: 3'- -GCUAGcACaAGCUCuAgUAGUUGGCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 35429 | 0.7 | 0.940214 |
Target: 5'- aCGuguUCGUGUUCGA---CGUCGGCuCGCu -3' miRNA: 3'- -GCu--AGCACAAGCUcuaGUAGUUG-GCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 11684 | 0.7 | 0.940214 |
Target: 5'- gGAUCGUGUggaagucgcUCGAGcgCuggCcGCCGCc -3' miRNA: 3'- gCUAGCACA---------AGCUCuaGua-GuUGGCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 14144 | 0.69 | 0.945246 |
Target: 5'- gGAUggCGUGcgcCGGGAUUGUCcGCCGCg -3' miRNA: 3'- gCUA--GCACaa-GCUCUAGUAGuUGGCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 37299 | 0.69 | 0.949992 |
Target: 5'- gCGAUCc-GUUCaAGAUCGgcauuucuaUCGACCGCa -3' miRNA: 3'- -GCUAGcaCAAGcUCUAGU---------AGUUGGCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 57675 | 0.69 | 0.962555 |
Target: 5'- aUGGcCGUGcgccaGAGGUCAUCcggAGCCGCg -3' miRNA: 3'- -GCUaGCACaag--CUCUAGUAG---UUGGCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 14709 | 0.69 | 0.962555 |
Target: 5'- aGAagGUGaugcucgUCGAGAUCGaCAGCCuGCa -3' miRNA: 3'- gCUagCACa------AGCUCUAGUaGUUGG-CG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 38531 | 0.68 | 0.966204 |
Target: 5'- aCGAgCGUGccgUCGuccggcguGAUC-UCGACCGCg -3' miRNA: 3'- -GCUaGCACa--AGCu-------CUAGuAGUUGGCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 50776 | 0.68 | 0.966204 |
Target: 5'- aGGUgCG-GUUCGAGAUCA--AGCCGa -3' miRNA: 3'- gCUA-GCaCAAGCUCUAGUagUUGGCg -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 59418 | 0.68 | 0.966204 |
Target: 5'- uGAUCGcGUUCG----CAUCAGCCGUc -3' miRNA: 3'- gCUAGCaCAAGCucuaGUAGUUGGCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 57741 | 0.68 | 0.969594 |
Target: 5'- uCGAUCGUGccgccgaUCGAG-UCGuucUCGACgCGCa -3' miRNA: 3'- -GCUAGCACa------AGCUCuAGU---AGUUG-GCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 28792 | 0.68 | 0.969594 |
Target: 5'- gCGG-CGgaacucgUCGAuAUCGUCGACCGCg -3' miRNA: 3'- -GCUaGCaca----AGCUcUAGUAGUUGGCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 60513 | 0.68 | 0.969594 |
Target: 5'- uCGGUCGcuugGUUCGcGAUC-UCGACCa- -3' miRNA: 3'- -GCUAGCa---CAAGCuCUAGuAGUUGGcg -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 20609 | 0.68 | 0.969594 |
Target: 5'- uCGA--GUGgggUGAGGUCGUCGcgagcGCCGCg -3' miRNA: 3'- -GCUagCACaa-GCUCUAGUAGU-----UGGCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 16587 | 0.68 | 0.969594 |
Target: 5'- gGcgCGUGUgcuggUCGAGG-CGgcgaagCAGCCGCg -3' miRNA: 3'- gCuaGCACA-----AGCUCUaGUa-----GUUGGCG- -5' |
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23995 | 3' | -47.9 | NC_005262.1 | + | 55814 | 0.68 | 0.969594 |
Target: 5'- cCGG-CGgcuaCGAGGUCGUgAGCCGCu -3' miRNA: 3'- -GCUaGCacaaGCUCUAGUAgUUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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