miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24000 5' -55 NC_005262.1 + 19844 1.13 0.000753
Target:  5'- gUCGCAAAGGAAGUCUCCGACCGCCGCa -3'
miRNA:   3'- -AGCGUUUCCUUCAGAGGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 53250 0.85 0.064241
Target:  5'- aCGCGAAGGGcgGGUUgCCGAUCGCCGCg -3'
miRNA:   3'- aGCGUUUCCU--UCAGaGGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 11682 0.77 0.227079
Target:  5'- aUCGUgu-GGAAGUCgcucgagcgCUGGCCGCCGCc -3'
miRNA:   3'- -AGCGuuuCCUUCAGa--------GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 61517 0.76 0.271373
Target:  5'- uUCGCGAcguGGAAuUCcUCGGCCGCCGCc -3'
miRNA:   3'- -AGCGUUu--CCUUcAGaGGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 41873 0.76 0.271373
Target:  5'- gCGCAuaguAGGGggGUCUguucUCGugCGCUGCg -3'
miRNA:   3'- aGCGU----UUCCuuCAGA----GGCugGCGGCG- -5'
24000 5' -55 NC_005262.1 + 7112 0.75 0.27824
Target:  5'- gCGCGAAGGAccugacGUCcaCCGaaGCCGCCGCg -3'
miRNA:   3'- aGCGUUUCCUu-----CAGa-GGC--UGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 49766 0.75 0.292388
Target:  5'- cCGCGcccGAGG-CUCCGGCCGCUGCc -3'
miRNA:   3'- aGCGUuucCUUCaGAGGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 76 0.75 0.314653
Target:  5'- cUCGCGAAG-AAGUCggCCGcGCCGCaCGCu -3'
miRNA:   3'- -AGCGUUUCcUUCAGa-GGC-UGGCG-GCG- -5'
24000 5' -55 NC_005262.1 + 7635 0.74 0.338176
Target:  5'- aCGgGAAGGAuGUCgucgagcgcgCCGACgCGCCGCc -3'
miRNA:   3'- aGCgUUUCCUuCAGa---------GGCUG-GCGGCG- -5'
24000 5' -55 NC_005262.1 + 5955 0.74 0.344662
Target:  5'- cUCGCGGaacucaauguAGGggGUCggcuuuugccggCCGGCUGCUGCu -3'
miRNA:   3'- -AGCGUU----------UCCuuCAGa-----------GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 57241 0.74 0.346297
Target:  5'- gUCGCcGGGGAuGUCgaCCGACacgGCCGCg -3'
miRNA:   3'- -AGCGuUUCCUuCAGa-GGCUGg--CGGCG- -5'
24000 5' -55 NC_005262.1 + 35179 0.73 0.371486
Target:  5'- -gGCAAu-GAGGUCa-CGACCGCCGCg -3'
miRNA:   3'- agCGUUucCUUCAGagGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 24614 0.73 0.380156
Target:  5'- aUCGCGAAGGucGUCaaggcuauUCCGAUCaGuCCGCa -3'
miRNA:   3'- -AGCGUUUCCuuCAG--------AGGCUGG-C-GGCG- -5'
24000 5' -55 NC_005262.1 + 60137 0.73 0.38896
Target:  5'- gUCGCGgcgaaggcauGGGcGAAGUaC-CCGGCCGCCGUg -3'
miRNA:   3'- -AGCGU----------UUC-CUUCA-GaGGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 50237 0.73 0.406964
Target:  5'- cCGCAAGGu--GUCggccgagaUCGACCGCCGCa -3'
miRNA:   3'- aGCGUUUCcuuCAGa-------GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 30975 0.73 0.406964
Target:  5'- gCGCGAGcGgcGUCaccaUCCGGCCGCCGg -3'
miRNA:   3'- aGCGUUUcCuuCAG----AGGCUGGCGGCg -5'
24000 5' -55 NC_005262.1 + 43944 0.73 0.406964
Target:  5'- aUCGCGcc-GAGGUCcugCCGgccACCGCCGCg -3'
miRNA:   3'- -AGCGUuucCUUCAGa--GGC---UGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 30088 0.72 0.434926
Target:  5'- -gGCAagAAGGgcGaCgacacgCCGGCCGCCGCg -3'
miRNA:   3'- agCGU--UUCCuuCaGa-----GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 20606 0.71 0.473873
Target:  5'- -aGUggGGuGAGGUCgUCgCGAgCGCCGCg -3'
miRNA:   3'- agCGuuUC-CUUCAG-AG-GCUgGCGGCG- -5'
24000 5' -55 NC_005262.1 + 24874 0.71 0.483883
Target:  5'- uUCGCGAugucGAAGUgCUcgcCCGGCuCGCCGCg -3'
miRNA:   3'- -AGCGUUuc--CUUCA-GA---GGCUG-GCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.