miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24000 5' -55 NC_005262.1 + 76 0.75 0.314653
Target:  5'- cUCGCGAAG-AAGUCggCCGcGCCGCaCGCu -3'
miRNA:   3'- -AGCGUUUCcUUCAGa-GGC-UGGCG-GCG- -5'
24000 5' -55 NC_005262.1 + 2240 0.71 0.51346
Target:  5'- cUGUAAGGGcaAAGUCUCgGGCCGCgucgaugacggccCGCg -3'
miRNA:   3'- aGCGUUUCC--UUCAGAGgCUGGCG-------------GCG- -5'
24000 5' -55 NC_005262.1 + 2664 0.71 0.504198
Target:  5'- gCGCcGGGcGgcGUC-CUGGCCGCCGUa -3'
miRNA:   3'- aGCGuUUC-CuuCAGaGGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 3649 0.65 0.807778
Target:  5'- gCGCAGcuucucccGGuuGUaCUCgCGGCCGUCGCu -3'
miRNA:   3'- aGCGUUu-------CCuuCA-GAG-GCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 4337 0.68 0.675102
Target:  5'- cUCGC--GGGccGUCcaUCGGCCGUCGCg -3'
miRNA:   3'- -AGCGuuUCCuuCAGa-GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 4583 0.66 0.778994
Target:  5'- gCGguAGGGGuugcGUCUCUGGCgGCgGUu -3'
miRNA:   3'- aGCguUUCCUu---CAGAGGCUGgCGgCG- -5'
24000 5' -55 NC_005262.1 + 4786 0.66 0.778994
Target:  5'- cUCGCAugucGGGA--UCggagCCGGCCGCguaGCg -3'
miRNA:   3'- -AGCGUu---UCCUucAGa---GGCUGGCGg--CG- -5'
24000 5' -55 NC_005262.1 + 5167 0.68 0.642677
Target:  5'- cCGCcGAGccGGUCgcacgcgCCG-CCGCCGCg -3'
miRNA:   3'- aGCGuUUCcuUCAGa------GGCuGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 5297 0.69 0.588569
Target:  5'- aUCGUgcAGGAuacgcccucGGUCgcgCCGGCCGCgccCGCg -3'
miRNA:   3'- -AGCGuuUCCU---------UCAGa--GGCUGGCG---GCG- -5'
24000 5' -55 NC_005262.1 + 5412 0.66 0.773068
Target:  5'- gCGCGGuGcGAAGcuccugccggccagCUCCGACCGCCu- -3'
miRNA:   3'- aGCGUUuC-CUUCa-------------GAGGCUGGCGGcg -5'
24000 5' -55 NC_005262.1 + 5709 0.68 0.675102
Target:  5'- gCGCAAcucgGGcGAGGUCgcgaacaUCGacGCCGCCGCg -3'
miRNA:   3'- aGCGUU----UC-CUUCAGa------GGC--UGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 5861 0.67 0.717733
Target:  5'- gCGCAAGauGGccuGUUUCCgGAUgGCCGCg -3'
miRNA:   3'- aGCGUUU--CCuu-CAGAGG-CUGgCGGCG- -5'
24000 5' -55 NC_005262.1 + 5955 0.74 0.344662
Target:  5'- cUCGCGGaacucaauguAGGggGUCggcuuuugccggCCGGCUGCUGCu -3'
miRNA:   3'- -AGCGUU----------UCCuuCAGa-----------GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 7112 0.75 0.27824
Target:  5'- gCGCGAAGGAccugacGUCcaCCGaaGCCGCCGCg -3'
miRNA:   3'- aGCGUUUCCUu-----CAGa-GGC--UGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 7635 0.74 0.338176
Target:  5'- aCGgGAAGGAuGUCgucgagcgcgCCGACgCGCCGCc -3'
miRNA:   3'- aGCgUUUCCUuCAGa---------GGCUG-GCGGCG- -5'
24000 5' -55 NC_005262.1 + 8366 0.66 0.797396
Target:  5'- cUCGCGAgcgacgcGGGcAGcUUCCucGGCCGCUGCu -3'
miRNA:   3'- -AGCGUU-------UCCuUCaGAGG--CUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 11682 0.77 0.227079
Target:  5'- aUCGUgu-GGAAGUCgcucgagcgCUGGCCGCCGCc -3'
miRNA:   3'- -AGCGuuuCCUUCAGa--------GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 15737 0.66 0.78875
Target:  5'- aUCGCGgaaggcGAGGggGaugC-CCGACgcguucaGCCGCg -3'
miRNA:   3'- -AGCGU------UUCCuuCa--GaGGCUGg------CGGCG- -5'
24000 5' -55 NC_005262.1 + 15862 0.7 0.57782
Target:  5'- cCGCcgaagauGAGGAAGUCgCCGGCCGgCa- -3'
miRNA:   3'- aGCGu------UUCCUUCAGaGGCUGGCgGcg -5'
24000 5' -55 NC_005262.1 + 16191 0.69 0.610166
Target:  5'- gCGCcGAGGAAGUcCUUCaGGCCcgcGCCGUu -3'
miRNA:   3'- aGCGuUUCCUUCA-GAGG-CUGG---CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.