miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24000 5' -55 NC_005262.1 + 17152 0.66 0.759048
Target:  5'- gUCGCAAucgaGAAGg--CCGGCaagGCCGCg -3'
miRNA:   3'- -AGCGUUuc--CUUCagaGGCUGg--CGGCG- -5'
24000 5' -55 NC_005262.1 + 54415 0.7 0.545863
Target:  5'- gCGCAAGcucgcGGAGG-CgcaGGCCGCCGCg -3'
miRNA:   3'- aGCGUUU-----CCUUCaGaggCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 57394 0.7 0.57782
Target:  5'- cUCGCu--GGAGaUCgagCUGACCGCCGa -3'
miRNA:   3'- -AGCGuuuCCUUcAGa--GGCUGGCGGCg -5'
24000 5' -55 NC_005262.1 + 20863 0.69 0.598274
Target:  5'- aCGC--AGGcAGUCaacUCCGuuacccaGCCGCCGCa -3'
miRNA:   3'- aGCGuuUCCuUCAG---AGGC-------UGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 48613 0.68 0.674026
Target:  5'- aUCGCAgcucgacGAGGAGGagC-CCGGCCGCUuCa -3'
miRNA:   3'- -AGCGU-------UUCCUUCa-GaGGCUGGCGGcG- -5'
24000 5' -55 NC_005262.1 + 44881 0.68 0.675102
Target:  5'- gCGCuacAAGGAuGUgUUCCaGCCGCUGCa -3'
miRNA:   3'- aGCGu--UUCCUuCA-GAGGcUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 4337 0.68 0.675102
Target:  5'- cUCGC--GGGccGUCcaUCGGCCGUCGCg -3'
miRNA:   3'- -AGCGuuUCCuuCAGa-GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 33837 0.68 0.690129
Target:  5'- uUCGCu-GGGAGGUCcccgagCUGAUcgaguggaucaacgaCGCCGCg -3'
miRNA:   3'- -AGCGuuUCCUUCAGa-----GGCUG---------------GCGGCG- -5'
24000 5' -55 NC_005262.1 + 31469 0.67 0.707172
Target:  5'- cCGUAAAGcGuuGGUCcgCCGACCucGCCGUc -3'
miRNA:   3'- aGCGUUUC-Cu-UCAGa-GGCUGG--CGGCG- -5'
24000 5' -55 NC_005262.1 + 42771 0.7 0.523832
Target:  5'- gUCGCGAcGGAcgGccagcccuacaucGUCUCCGGCgCGUCGCc -3'
miRNA:   3'- -AGCGUUuCCU--U-------------CAGAGGCUG-GCGGCG- -5'
24000 5' -55 NC_005262.1 + 2240 0.71 0.51346
Target:  5'- cUGUAAGGGcaAAGUCUCgGGCCGCgucgaugacggccCGCg -3'
miRNA:   3'- aGCGUUUCC--UUCAGAGgCUGGCG-------------GCG- -5'
24000 5' -55 NC_005262.1 + 2664 0.71 0.504198
Target:  5'- gCGCcGGGcGgcGUC-CUGGCCGCCGUa -3'
miRNA:   3'- aGCGuUUC-CuuCAGaGGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 49766 0.75 0.292388
Target:  5'- cCGCGcccGAGG-CUCCGGCCGCUGCc -3'
miRNA:   3'- aGCGUuucCUUCaGAGGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 76 0.75 0.314653
Target:  5'- cUCGCGAAG-AAGUCggCCGcGCCGCaCGCu -3'
miRNA:   3'- -AGCGUUUCcUUCAGa-GGC-UGGCG-GCG- -5'
24000 5' -55 NC_005262.1 + 5955 0.74 0.344662
Target:  5'- cUCGCGGaacucaauguAGGggGUCggcuuuugccggCCGGCUGCUGCu -3'
miRNA:   3'- -AGCGUU----------UCCuuCAGa-----------GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 35179 0.73 0.371486
Target:  5'- -gGCAAu-GAGGUCa-CGACCGCCGCg -3'
miRNA:   3'- agCGUUucCUUCAGagGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 60137 0.73 0.38896
Target:  5'- gUCGCGgcgaaggcauGGGcGAAGUaC-CCGGCCGCCGUg -3'
miRNA:   3'- -AGCGU----------UUC-CUUCA-GaGGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 50237 0.73 0.406964
Target:  5'- cCGCAAGGu--GUCggccgagaUCGACCGCCGCa -3'
miRNA:   3'- aGCGUUUCcuuCAGa-------GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 30088 0.72 0.434926
Target:  5'- -gGCAagAAGGgcGaCgacacgCCGGCCGCCGCg -3'
miRNA:   3'- agCGU--UUCCuuCaGa-----GGCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 24804 0.71 0.483883
Target:  5'- aUCGCGAAGGGcaagcgcgAG-CUCgCGAUCGCgGCc -3'
miRNA:   3'- -AGCGUUUCCU--------UCaGAG-GCUGGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.