miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24016 3' -59.3 NC_005262.1 + 17166 0.66 0.551802
Target:  5'- -cGCCGcGUCgacggGCgCGCCUAUCgGCGc -3'
miRNA:   3'- cuCGGCcUAGa----CG-GCGGAUAGgCGCu -5'
24016 3' -59.3 NC_005262.1 + 62570 0.66 0.531098
Target:  5'- uGGUCGGAggcggcgagcUUUGCCGCCU-UCUGCu- -3'
miRNA:   3'- cUCGGCCU----------AGACGGCGGAuAGGCGcu -5'
24016 3' -59.3 NC_005262.1 + 35906 0.66 0.524941
Target:  5'- gGGGCCGGcacaguGUCgauggccucgacuuUGCCuaccgugugaacgcGCCUAUCCGCGu -3'
miRNA:   3'- -CUCGGCC------UAG--------------ACGG--------------CGGAUAGGCGCu -5'
24016 3' -59.3 NC_005262.1 + 50403 0.66 0.520851
Target:  5'- cGGCgGGcgCUGCgGCCggcuccucaAUCCGCGc -3'
miRNA:   3'- cUCGgCCuaGACGgCGGa--------UAGGCGCu -5'
24016 3' -59.3 NC_005262.1 + 42635 0.66 0.510682
Target:  5'- cGGCauGAUg-GCCGCCU-UCCGCGGg -3'
miRNA:   3'- cUCGgcCUAgaCGGCGGAuAGGCGCU- -5'
24016 3' -59.3 NC_005262.1 + 4684 0.66 0.504621
Target:  5'- cGGCCGGAUCggGCCGCggcAUCCagucguugcgcaaguGCGGg -3'
miRNA:   3'- cUCGGCCUAGa-CGGCGga-UAGG---------------CGCU- -5'
24016 3' -59.3 NC_005262.1 + 25123 0.66 0.500597
Target:  5'- uGAGCUGGcgC-GCUGCUUGUCCGa-- -3'
miRNA:   3'- -CUCGGCCuaGaCGGCGGAUAGGCgcu -5'
24016 3' -59.3 NC_005262.1 + 45088 0.67 0.490601
Target:  5'- -uGuuGGcGUCcGCCGCCUG-CCGCGc -3'
miRNA:   3'- cuCggCC-UAGaCGGCGGAUaGGCGCu -5'
24016 3' -59.3 NC_005262.1 + 12577 0.67 0.490601
Target:  5'- cGAGCUGcugCUGCCGCCggcgaggcgUCGCGGa -3'
miRNA:   3'- -CUCGGCcuaGACGGCGGaua------GGCGCU- -5'
24016 3' -59.3 NC_005262.1 + 10472 0.67 0.461194
Target:  5'- uGGCCGGAUUgaucCUGCCacuUCCGCGu -3'
miRNA:   3'- cUCGGCCUAGac--GGCGGau-AGGCGCu -5'
24016 3' -59.3 NC_005262.1 + 32724 0.67 0.451599
Target:  5'- cGAGCuCGGcgugCUGCCgGCCgaccacUCCGUGAg -3'
miRNA:   3'- -CUCG-GCCua--GACGG-CGGau----AGGCGCU- -5'
24016 3' -59.3 NC_005262.1 + 12150 0.67 0.442114
Target:  5'- aGAGCCaGGUUUcgaaccugaagGCCGCgCUGUCUGCGc -3'
miRNA:   3'- -CUCGGcCUAGA-----------CGGCG-GAUAGGCGCu -5'
24016 3' -59.3 NC_005262.1 + 5223 0.68 0.423489
Target:  5'- cGAGCaGGAUCagcGCCGCCcGUCgCGCa- -3'
miRNA:   3'- -CUCGgCCUAGa--CGGCGGaUAG-GCGcu -5'
24016 3' -59.3 NC_005262.1 + 49106 0.68 0.396454
Target:  5'- -cGCCGGGcauggugcUCgcgaagGCUGCCUAUCUgGCGAa -3'
miRNA:   3'- cuCGGCCU--------AGa-----CGGCGGAUAGG-CGCU- -5'
24016 3' -59.3 NC_005262.1 + 46541 0.68 0.387693
Target:  5'- cAGCgCGGcgCcgGCCGCCgcucCCGCGAc -3'
miRNA:   3'- cUCG-GCCuaGa-CGGCGGaua-GGCGCU- -5'
24016 3' -59.3 NC_005262.1 + 53948 0.68 0.387693
Target:  5'- cGGCCGGcuugagcgcgAUCUGCuUGCC-GUCCGCGc -3'
miRNA:   3'- cUCGGCC----------UAGACG-GCGGaUAGGCGCu -5'
24016 3' -59.3 NC_005262.1 + 3723 0.68 0.386824
Target:  5'- uGAGCUGGGcCUG-CGCCUGgauggguUCCGCGc -3'
miRNA:   3'- -CUCGGCCUaGACgGCGGAU-------AGGCGCu -5'
24016 3' -59.3 NC_005262.1 + 14553 0.69 0.37906
Target:  5'- -cGCUGGAUCgGCaggCGUCUcgCCGCGGc -3'
miRNA:   3'- cuCGGCCUAGaCG---GCGGAuaGGCGCU- -5'
24016 3' -59.3 NC_005262.1 + 32872 0.69 0.370556
Target:  5'- uGGCCGGcgC-GCCGCCggugucgagcuUGUCgGCGAu -3'
miRNA:   3'- cUCGGCCuaGaCGGCGG-----------AUAGgCGCU- -5'
24016 3' -59.3 NC_005262.1 + 43426 0.69 0.362184
Target:  5'- -cGCCGcGUCgaucGCCGCCUGUUCaGCGGc -3'
miRNA:   3'- cuCGGCcUAGa---CGGCGGAUAGG-CGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.