miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24016 5' -50.7 NC_005262.1 + 53228 0.66 0.945983
Target:  5'- cGCCGcguCGAAGAAcucgcgcGGCAUCGCg-- -3'
miRNA:   3'- cUGGCu--GCUUCUUua-----CCGUAGCGagu -5'
24016 5' -50.7 NC_005262.1 + 30927 0.66 0.940998
Target:  5'- -cCCGACGucGAcGAUGcGCGUCGC-CGa -3'
miRNA:   3'- cuGGCUGCuuCU-UUAC-CGUAGCGaGU- -5'
24016 5' -50.7 NC_005262.1 + 18519 0.66 0.940998
Target:  5'- uGCCGACcagauGGAAA-GGCAagucgCGCUCAu -3'
miRNA:   3'- cUGGCUGcu---UCUUUaCCGUa----GCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 41480 0.66 0.935725
Target:  5'- cGCCGACGAuGAAGcGGUcgCGUaggUCAg -3'
miRNA:   3'- cUGGCUGCUuCUUUaCCGuaGCG---AGU- -5'
24016 5' -50.7 NC_005262.1 + 22007 0.66 0.932423
Target:  5'- aACCGAauuaGGAGAAAUGGCAaaguaauuuuauucuUCGUgUCGu -3'
miRNA:   3'- cUGGCUg---CUUCUUUACCGU---------------AGCG-AGU- -5'
24016 5' -50.7 NC_005262.1 + 52788 0.66 0.930162
Target:  5'- cGACCGcuACGGccgcuucaaGGAuucgcAGUGGCAggCGCUCGg -3'
miRNA:   3'- -CUGGC--UGCU---------UCU-----UUACCGUa-GCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 20700 0.66 0.92959
Target:  5'- cGCCGAcuuCGAAGGcgcagcccaucacGGUcGCGUCGCUCGg -3'
miRNA:   3'- cUGGCU---GCUUCU-------------UUAcCGUAGCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 62969 0.66 0.924308
Target:  5'- cGCUGGCGGGu-GAUGGUGUCGCcCAu -3'
miRNA:   3'- cUGGCUGCUUcuUUACCGUAGCGaGU- -5'
24016 5' -50.7 NC_005262.1 + 22505 0.66 0.924308
Target:  5'- uGCCGGCGAGca---GGCggCGCUCGa -3'
miRNA:   3'- cUGGCUGCUUcuuuaCCGuaGCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 38053 0.66 0.924308
Target:  5'- cGACCGugGu--AAA-GGCAcCGCUCAc -3'
miRNA:   3'- -CUGGCugCuucUUUaCCGUaGCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 46981 0.66 0.924308
Target:  5'- cGGCCugugGGCGAAGgcAUGGCG-CGCgacgCAg -3'
miRNA:   3'- -CUGG----CUGCUUCuuUACCGUaGCGa---GU- -5'
24016 5' -50.7 NC_005262.1 + 12529 0.66 0.924308
Target:  5'- -cUCGACGAGGAucGUGcgccGCAUCgGCUCGg -3'
miRNA:   3'- cuGGCUGCUUCUu-UAC----CGUAG-CGAGU- -5'
24016 5' -50.7 NC_005262.1 + 47754 0.67 0.918163
Target:  5'- cGGCCG-CGgcGAAcccGGCAUCGCg-- -3'
miRNA:   3'- -CUGGCuGCuuCUUua-CCGUAGCGagu -5'
24016 5' -50.7 NC_005262.1 + 15934 0.67 0.911727
Target:  5'- aGAgCGAgGAGGAAGUGcuGCAcaCGCUCGg -3'
miRNA:   3'- -CUgGCUgCUUCUUUAC--CGUa-GCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 52708 0.67 0.905003
Target:  5'- cGGCCGACGccGGAcgaGGCcgCGCUg- -3'
miRNA:   3'- -CUGGCUGCuuCUUua-CCGuaGCGAgu -5'
24016 5' -50.7 NC_005262.1 + 32891 0.67 0.897994
Target:  5'- aGGCCGACGucGAacgcGAUGGCcggCGCg-- -3'
miRNA:   3'- -CUGGCUGCuuCU----UUACCGua-GCGagu -5'
24016 5' -50.7 NC_005262.1 + 49334 0.67 0.890702
Target:  5'- uGACCGACGAgcAGgcGcGcGCcgCGCUCGc -3'
miRNA:   3'- -CUGGCUGCU--UCuuUaC-CGuaGCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 34231 0.67 0.889958
Target:  5'- cGGCCGGCGGguAGAcguagaaGAUGcGCGgugcgCGCUCGu -3'
miRNA:   3'- -CUGGCUGCU--UCU-------UUAC-CGUa----GCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 35366 0.68 0.875295
Target:  5'- cGACCGGCGGAaauaugcUGGCGcacgcggCGCUCAa -3'
miRNA:   3'- -CUGGCUGCUUcuuu---ACCGUa------GCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 57495 0.68 0.875295
Target:  5'- cGGCCGACGAGgcgccGAAGUucaGCGUCGCg-- -3'
miRNA:   3'- -CUGGCUGCUU-----CUUUAc--CGUAGCGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.