miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24037 3' -62.3 NC_005262.1 + 33068 1.12 0.000212
Target:  5'- gGGCCCUCGACCCUCUCGCCACGGCGGg -3'
miRNA:   3'- -CCGGGAGCUGGGAGAGCGGUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 57551 0.8 0.053699
Target:  5'- cGCCCUCGACCUccaUCgUCGCCGCcGCGGc -3'
miRNA:   3'- cCGGGAGCUGGG---AG-AGCGGUGcCGCC- -5'
24037 3' -62.3 NC_005262.1 + 40509 0.76 0.104738
Target:  5'- cGGCaCCaUCGACCUgcgcgacaaguUCaUCGUCGCGGCGGg -3'
miRNA:   3'- -CCG-GG-AGCUGGG-----------AG-AGCGGUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 2775 0.72 0.179978
Target:  5'- aGGCgCUCGAgCgugagCUUGCUACGGCGGc -3'
miRNA:   3'- -CCGgGAGCUgGga---GAGCGGUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 11331 0.72 0.184554
Target:  5'- cGGCCCUCcuccgcaaGACgCCgCUCGCgCGCGGCa- -3'
miRNA:   3'- -CCGGGAG--------CUG-GGaGAGCG-GUGCCGcc -5'
24037 3' -62.3 NC_005262.1 + 24861 0.72 0.194017
Target:  5'- aGUgCUCG-CCCggCUCGCCGCGGUGc -3'
miRNA:   3'- cCGgGAGCuGGGa-GAGCGGUGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 50500 0.71 0.209005
Target:  5'- cGGCCCUCG-CgCUCcgcggcgcugaUCGCCGC-GCGGu -3'
miRNA:   3'- -CCGGGAGCuGgGAG-----------AGCGGUGcCGCC- -5'
24037 3' -62.3 NC_005262.1 + 47847 0.71 0.209005
Target:  5'- aGCCCgcgCGAUgCCgggUUCGCCGCGGcCGGc -3'
miRNA:   3'- cCGGGa--GCUG-GGa--GAGCGGUGCC-GCC- -5'
24037 3' -62.3 NC_005262.1 + 32097 0.71 0.230533
Target:  5'- cGGCCUUuuccaCGGCCUUCUCGaUgACGaGCGGg -3'
miRNA:   3'- -CCGGGA-----GCUGGGAGAGC-GgUGC-CGCC- -5'
24037 3' -62.3 NC_005262.1 + 34256 0.7 0.253903
Target:  5'- aGCgUCUCGACCUUCgUGCCGgcgacggcCGGCGGg -3'
miRNA:   3'- cCG-GGAGCUGGGAGaGCGGU--------GCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 45056 0.69 0.272681
Target:  5'- uGCaCgUCGGCCC--UCGCCuCGGCGGc -3'
miRNA:   3'- cCG-GgAGCUGGGagAGCGGuGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 43906 0.69 0.279184
Target:  5'- cGGCCCgCGGCCgUgUCGCCGCGa--- -3'
miRNA:   3'- -CCGGGaGCUGGgAgAGCGGUGCcgcc -5'
24037 3' -62.3 NC_005262.1 + 59008 0.69 0.279184
Target:  5'- cGCgCUUCGACCgUCUgcaaGCCGCGGUGc -3'
miRNA:   3'- cCG-GGAGCUGGgAGAg---CGGUGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 30619 0.69 0.306427
Target:  5'- cGGCCUUCGGCgUUgcUUCGCCcagguCGGCGa -3'
miRNA:   3'- -CCGGGAGCUGgGA--GAGCGGu----GCCGCc -5'
24037 3' -62.3 NC_005262.1 + 49592 0.69 0.306427
Target:  5'- aGGCCCUCGGCgaUCgCGCUGCGcGCa- -3'
miRNA:   3'- -CCGGGAGCUGggAGaGCGGUGC-CGcc -5'
24037 3' -62.3 NC_005262.1 + 12219 0.68 0.320794
Target:  5'- uGGCUCUccagcgcggCGAUCUgCUCGCgcgCACGGCGGc -3'
miRNA:   3'- -CCGGGA---------GCUGGGaGAGCG---GUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 14553 0.68 0.33566
Target:  5'- cGCUggaUCGGCaggCgUCUCGCCGCGGCGc -3'
miRNA:   3'- cCGGg--AGCUG---GgAGAGCGGUGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 9215 0.68 0.33566
Target:  5'- cGGCCCggcgcCGGUCCUCauaGCCGCuGCGGu -3'
miRNA:   3'- -CCGGGa----GCUGGGAGag-CGGUGcCGCC- -5'
24037 3' -62.3 NC_005262.1 + 43935 0.68 0.33566
Target:  5'- aGGUCCUgcCGGCCac--CGCCGCGcGCGGc -3'
miRNA:   3'- -CCGGGA--GCUGGgagaGCGGUGC-CGCC- -5'
24037 3' -62.3 NC_005262.1 + 26022 0.68 0.34328
Target:  5'- gGGCacguaCUaCG-CCCagcagCUCGCCGCGGCGc -3'
miRNA:   3'- -CCGg----GA-GCuGGGa----GAGCGGUGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.