miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24037 3' -62.3 NC_005262.1 + 1400 0.66 0.462436
Target:  5'- cGGCCCUUGcGCUgaugaUC-CGCCACGaccGCGGc -3'
miRNA:   3'- -CCGGGAGC-UGGg----AGaGCGGUGC---CGCC- -5'
24037 3' -62.3 NC_005262.1 + 2425 0.66 0.435048
Target:  5'- aGGCuaguuCCUCGGCugCCUgccaCUCGCCggucuuACGGUGGa -3'
miRNA:   3'- -CCG-----GGAGCUG--GGA----GAGCGG------UGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 2775 0.72 0.179978
Target:  5'- aGGCgCUCGAgCgugagCUUGCUACGGCGGc -3'
miRNA:   3'- -CCGgGAGCUgGga---GAGCGGUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 6291 0.67 0.407757
Target:  5'- cGGCCUUCGccGCCUUCUugcgcucgccggcCGCCucucguCGGCGc -3'
miRNA:   3'- -CCGGGAGC--UGGGAGA-------------GCGGu-----GCCGCc -5'
24037 3' -62.3 NC_005262.1 + 6647 0.67 0.412086
Target:  5'- cGGCgCUUCGAUCgCg-UCGCCguccucgauccacgaGCGGCGGa -3'
miRNA:   3'- -CCG-GGAGCUGG-GagAGCGG---------------UGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 9215 0.68 0.33566
Target:  5'- cGGCCCggcgcCGGUCCUCauaGCCGCuGCGGu -3'
miRNA:   3'- -CCGGGa----GCUGGGAGag-CGGUGcCGCC- -5'
24037 3' -62.3 NC_005262.1 + 11082 0.68 0.358889
Target:  5'- cGGCCaaagggCGGCCCgCUgGCaCGCuuGGCGGg -3'
miRNA:   3'- -CCGGga----GCUGGGaGAgCG-GUG--CCGCC- -5'
24037 3' -62.3 NC_005262.1 + 11293 0.67 0.366074
Target:  5'- cGGCUCUCGAUCUUgcagguggCGCgcacgauCACGGCGGc -3'
miRNA:   3'- -CCGGGAGCUGGGAga------GCG-------GUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 11331 0.72 0.184554
Target:  5'- cGGCCCUCcuccgcaaGACgCCgCUCGCgCGCGGCa- -3'
miRNA:   3'- -CCGGGAG--------CUG-GGaGAGCG-GUGCCGcc -5'
24037 3' -62.3 NC_005262.1 + 12219 0.68 0.320794
Target:  5'- uGGCUCUccagcgcggCGAUCUgCUCGCgcgCACGGCGGc -3'
miRNA:   3'- -CCGGGA---------GCUGGGaGAGCG---GUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 14256 0.67 0.400037
Target:  5'- cGGCUUgcCGcACUC-CUCGgCGCGGCGGa -3'
miRNA:   3'- -CCGGGa-GC-UGGGaGAGCgGUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 14553 0.68 0.33566
Target:  5'- cGCUggaUCGGCaggCgUCUCGCCGCGGCGc -3'
miRNA:   3'- cCGGg--AGCUG---GgAGAGCGGUGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 17242 0.68 0.351023
Target:  5'- cGGCCUUgcCGGCCUUCUCGauugcgaCGCGcGCGu -3'
miRNA:   3'- -CCGGGA--GCUGGGAGAGCg------GUGC-CGCc -5'
24037 3' -62.3 NC_005262.1 + 18781 0.66 0.453205
Target:  5'- -uCCUUCaGCCCguaagcaaUCGCCACGuGCGGc -3'
miRNA:   3'- ccGGGAGcUGGGag------AGCGGUGC-CGCC- -5'
24037 3' -62.3 NC_005262.1 + 22265 0.68 0.350243
Target:  5'- cGGCUuccagcuuCUCGACCUUCgccuccagcUCggcgaugcgggcaGCCGCGGCGGc -3'
miRNA:   3'- -CCGG--------GAGCUGGGAG---------AG-------------CGGUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 24307 0.66 0.462436
Target:  5'- cGCCCU-GAUgCUUCUCGCgAUGGuCGGc -3'
miRNA:   3'- cCGGGAgCUG-GGAGAGCGgUGCC-GCC- -5'
24037 3' -62.3 NC_005262.1 + 24861 0.72 0.194017
Target:  5'- aGUgCUCG-CCCggCUCGCCGCGGUGc -3'
miRNA:   3'- cCGgGAGCuGGGa-GAGCGGUGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 24975 0.66 0.453205
Target:  5'- uGGCCgagCUCG-CCUUCaCGCgC-CGGCGGa -3'
miRNA:   3'- -CCGG---GAGCuGGGAGaGCG-GuGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 25764 0.66 0.423474
Target:  5'- cGGCCCUCGGCCgUcgacucgaugaCcagaaugcccgacuUCGgCACGGcCGGg -3'
miRNA:   3'- -CCGGGAGCUGGgA-----------G--------------AGCgGUGCC-GCC- -5'
24037 3' -62.3 NC_005262.1 + 26022 0.68 0.34328
Target:  5'- gGGCacguaCUaCG-CCCagcagCUCGCCGCGGCGc -3'
miRNA:   3'- -CCGg----GA-GCuGGGa----GAGCGGUGCCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.