miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24037 3' -62.3 NC_005262.1 + 33068 1.12 0.000212
Target:  5'- gGGCCCUCGACCCUCUCGCCACGGCGGg -3'
miRNA:   3'- -CCGGGAGCUGGGAGAGCGGUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 62084 0.66 0.426128
Target:  5'- aGCuUCUCGACCUcaugcgUCgcCGCCGCGGCa- -3'
miRNA:   3'- cCG-GGAGCUGGG------AGa-GCGGUGCCGcc -5'
24037 3' -62.3 NC_005262.1 + 2425 0.66 0.435048
Target:  5'- aGGCuaguuCCUCGGCugCCUgccaCUCGCCggucuuACGGUGGa -3'
miRNA:   3'- -CCG-----GGAGCUG--GGA----GAGCGG------UGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 43831 0.66 0.444074
Target:  5'- cGGCCg-CGGgCCggcCGCgCGCGGCGGu -3'
miRNA:   3'- -CCGGgaGCUgGGagaGCG-GUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 18781 0.66 0.453205
Target:  5'- -uCCUUCaGCCCguaagcaaUCGCCACGuGCGGc -3'
miRNA:   3'- ccGGGAGcUGGGag------AGCGGUGC-CGCC- -5'
24037 3' -62.3 NC_005262.1 + 48346 0.66 0.462436
Target:  5'- cGGCacgaC-CGACCCgg-CGCUGCuGGCGGc -3'
miRNA:   3'- -CCGg---GaGCUGGGagaGCGGUG-CCGCC- -5'
24037 3' -62.3 NC_005262.1 + 1400 0.66 0.462436
Target:  5'- cGGCCCUUGcGCUgaugaUC-CGCCACGaccGCGGc -3'
miRNA:   3'- -CCGGGAGC-UGGg----AGaGCGGUGC---CGCC- -5'
24037 3' -62.3 NC_005262.1 + 24307 0.66 0.462436
Target:  5'- cGCCCU-GAUgCUUCUCGCgAUGGuCGGc -3'
miRNA:   3'- cCGGGAgCUG-GGAGAGCGgUGCC-GCC- -5'
24037 3' -62.3 NC_005262.1 + 57199 0.66 0.462436
Target:  5'- -cCCgCUCGACCCggaCcUGCCGguCGGCGGc -3'
miRNA:   3'- ccGG-GAGCUGGGa--GaGCGGU--GCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 40686 0.66 0.426128
Target:  5'- cGUCUaCGACCCUggacaCUCGCacggccauaaUACGGCGGc -3'
miRNA:   3'- cCGGGaGCUGGGA-----GAGCG----------GUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 6647 0.67 0.412086
Target:  5'- cGGCgCUUCGAUCgCg-UCGCCguccucgauccacgaGCGGCGGa -3'
miRNA:   3'- -CCG-GGAGCUGG-GagAGCGG---------------UGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 6291 0.67 0.407757
Target:  5'- cGGCCUUCGccGCCUUCUugcgcucgccggcCGCCucucguCGGCGc -3'
miRNA:   3'- -CCGGGAGC--UGGGAGA-------------GCGGu-----GCCGCc -5'
24037 3' -62.3 NC_005262.1 + 40509 0.76 0.104738
Target:  5'- cGGCaCCaUCGACCUgcgcgacaaguUCaUCGUCGCGGCGGg -3'
miRNA:   3'- -CCG-GG-AGCUGGG-----------AG-AGCGGUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 11331 0.72 0.184554
Target:  5'- cGGCCCUCcuccgcaaGACgCCgCUCGCgCGCGGCa- -3'
miRNA:   3'- -CCGGGAG--------CUG-GGaGAGCG-GUGCCGcc -5'
24037 3' -62.3 NC_005262.1 + 59008 0.69 0.279184
Target:  5'- cGCgCUUCGACCgUCUgcaaGCCGCGGUGc -3'
miRNA:   3'- cCG-GGAGCUGGgAGAg---CGGUGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 14553 0.68 0.33566
Target:  5'- cGCUggaUCGGCaggCgUCUCGCCGCGGCGc -3'
miRNA:   3'- cCGGg--AGCUG---GgAGAGCGGUGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 26022 0.68 0.34328
Target:  5'- gGGCacguaCUaCG-CCCagcagCUCGCCGCGGCGc -3'
miRNA:   3'- -CCGg----GA-GCuGGGa----GAGCGGUGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 33902 0.68 0.351023
Target:  5'- cGGCCggCGGCCCgaUCGguaGCGGCGGu -3'
miRNA:   3'- -CCGGgaGCUGGGagAGCgg-UGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 11082 0.68 0.358889
Target:  5'- cGGCCaaagggCGGCCCgCUgGCaCGCuuGGCGGg -3'
miRNA:   3'- -CCGGga----GCUGGGaGAgCG-GUG--CCGCC- -5'
24037 3' -62.3 NC_005262.1 + 58119 0.67 0.383219
Target:  5'- cGCUC-CGGCCCUCUC-CCAaGGCa- -3'
miRNA:   3'- cCGGGaGCUGGGAGAGcGGUgCCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.