miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24060 5' -65.1 NC_005262.1 + 70 0.66 0.305007
Target:  5'- cCGC--GGCUCGCGaagaagucGGCCgCGCCGCa -3'
miRNA:   3'- -GCGuuCCGAGCGUcc------CCGG-GCGGCGc -5'
24060 5' -65.1 NC_005262.1 + 1261 0.66 0.298031
Target:  5'- uCGCAcuGGGCUuccgCGCAGGauggcaaGCCCG-CGCGg -3'
miRNA:   3'- -GCGU--UCCGA----GCGUCCc------CGGGCgGCGC- -5'
24060 5' -65.1 NC_005262.1 + 61413 0.66 0.298031
Target:  5'- gCGCGAGGCgaagGCGGcGGCCgaggaauuccaCGUCGCGa -3'
miRNA:   3'- -GCGUUCCGag--CGUCcCCGG-----------GCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 35344 0.66 0.284451
Target:  5'- uCGUGccGUUCGCcgGGGGcGCCCaGCCGCu -3'
miRNA:   3'- -GCGUucCGAGCG--UCCC-CGGG-CGGCGc -5'
24060 5' -65.1 NC_005262.1 + 48142 0.66 0.277846
Target:  5'- gGCAGGugcgaccgacgcGCUUGCGGGcgcGGCCgGCUGCu -3'
miRNA:   3'- gCGUUC------------CGAGCGUCC---CCGGgCGGCGc -5'
24060 5' -65.1 NC_005262.1 + 4330 0.66 0.271364
Target:  5'- gGCGAGcCUCGCGGGccguccaucGGCC-GUCGCGa -3'
miRNA:   3'- gCGUUCcGAGCGUCC---------CCGGgCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 15047 0.66 0.271364
Target:  5'- --gGGGGUUCGCcgucuuuuccgaAGGGGUUCGCgGCGu -3'
miRNA:   3'- gcgUUCCGAGCG------------UCCCCGGGCGgCGC- -5'
24060 5' -65.1 NC_005262.1 + 48169 0.66 0.271364
Target:  5'- gCGCGucGGCgC-CGGGcGGCUCGUCGCGg -3'
miRNA:   3'- -GCGUu-CCGaGcGUCC-CCGGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 22363 0.66 0.271364
Target:  5'- cCGCGuGGUgCGgAGGGuGUCCGgCGCGg -3'
miRNA:   3'- -GCGUuCCGaGCgUCCC-CGGGCgGCGC- -5'
24060 5' -65.1 NC_005262.1 + 17189 0.67 0.258766
Target:  5'- gCGCGGuGGaccucCUCGC---GGCCCGCCGCGu -3'
miRNA:   3'- -GCGUU-CC-----GAGCGuccCCGGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 38530 0.67 0.258149
Target:  5'- gGCAAGaGCuacacggUCGCGGugacgaucGGCaCCGCCGCGg -3'
miRNA:   3'- gCGUUC-CG-------AGCGUCc-------CCG-GGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 17203 0.67 0.250836
Target:  5'- aGCAAGGC-CGUuaucaccgaggaaaAGcGGCUCGUCGCGa -3'
miRNA:   3'- gCGUUCCGaGCG--------------UCcCCGGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 59277 0.67 0.24665
Target:  5'- uCGCAAGGCgcuccauCAGcGGGCCCGUgagcugcuucuuCGCGu -3'
miRNA:   3'- -GCGUUCCGagc----GUC-CCCGGGCG------------GCGC- -5'
24060 5' -65.1 NC_005262.1 + 34998 0.67 0.24077
Target:  5'- aGCcGGGCa-GCAGcgcGGGCCCGuCCGUa -3'
miRNA:   3'- gCGuUCCGagCGUC---CCCGGGC-GGCGc -5'
24060 5' -65.1 NC_005262.1 + 53506 0.67 0.235007
Target:  5'- uGCAGacGC-CGCAGGGGCCgGCC-Ca -3'
miRNA:   3'- gCGUUc-CGaGCGUCCCCGGgCGGcGc -5'
24060 5' -65.1 NC_005262.1 + 11519 0.67 0.235007
Target:  5'- gGCGcGGCgugucgCGCAccuucGGcGGCCCGgCGCGg -3'
miRNA:   3'- gCGUuCCGa-----GCGU-----CC-CCGGGCgGCGC- -5'
24060 5' -65.1 NC_005262.1 + 17096 0.68 0.229361
Target:  5'- aCGCGgcGGGC-CGCgAGGaGGUCCaCCGCGc -3'
miRNA:   3'- -GCGU--UCCGaGCG-UCC-CCGGGcGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 49895 0.68 0.228803
Target:  5'- gCGCGgccgaucGGGCcggacggUGCAGGGGCguCCGgCGCGg -3'
miRNA:   3'- -GCGU-------UCCGa------GCGUCCCCG--GGCgGCGC- -5'
24060 5' -65.1 NC_005262.1 + 22206 0.68 0.218949
Target:  5'- aCGCcGGGCUCGCGcucgacaagcucacGGCCgCGCCGCc -3'
miRNA:   3'- -GCGuUCCGAGCGUcc------------CCGG-GCGGCGc -5'
24060 5' -65.1 NC_005262.1 + 50320 0.68 0.218412
Target:  5'- aGCc-GGC-CGCAGc-GCCCGCCGCGc -3'
miRNA:   3'- gCGuuCCGaGCGUCccCGGGCGGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.