miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24064 5' -52.6 NC_005262.1 + 17487 0.66 0.879611
Target:  5'- cGAAgcgCGcGCCGCgcgcgacGCGUCGAUCGGc -3'
miRNA:   3'- uCUUa--GCuUGGUGa------CGCGGCUAGCUa -5'
24064 5' -52.6 NC_005262.1 + 21838 0.66 0.871745
Target:  5'- uGAcgCGuGCCGCUGCG-CGAUCu-- -3'
miRNA:   3'- uCUuaGCuUGGUGACGCgGCUAGcua -5'
24064 5' -52.6 NC_005262.1 + 51114 0.66 0.871745
Target:  5'- -cGAUCGuGCUcgAC-GCGCCGGUCGAc -3'
miRNA:   3'- ucUUAGCuUGG--UGaCGCGGCUAGCUa -5'
24064 5' -52.6 NC_005262.1 + 22674 0.66 0.871745
Target:  5'- aGGGcgCGGACCAgUGCGCaGAcgcgccUCGAc -3'
miRNA:   3'- -UCUuaGCUUGGUgACGCGgCU------AGCUa -5'
24064 5' -52.6 NC_005262.1 + 30409 0.66 0.871745
Target:  5'- ----aCGAGCCGCgUGCGCUGGaCGGc -3'
miRNA:   3'- ucuuaGCUUGGUG-ACGCGGCUaGCUa -5'
24064 5' -52.6 NC_005262.1 + 55641 0.66 0.866902
Target:  5'- cGggUCGAugCccuugauguugcucuGCUGCGUCGcgaaGUCGAg -3'
miRNA:   3'- uCuuAGCUugG---------------UGACGCGGC----UAGCUa -5'
24064 5' -52.6 NC_005262.1 + 10693 0.66 0.862797
Target:  5'- uGGAGUCGuccaugucaucgaAGCCGCUcGCGCCGcgCu-- -3'
miRNA:   3'- -UCUUAGC-------------UUGGUGA-CGCGGCuaGcua -5'
24064 5' -52.6 NC_005262.1 + 45905 0.66 0.855253
Target:  5'- aAGGAUCcgaccgGAugCGC-GCGCCGAUCa-- -3'
miRNA:   3'- -UCUUAG------CUugGUGaCGCGGCUAGcua -5'
24064 5' -52.6 NC_005262.1 + 27920 0.66 0.846643
Target:  5'- cGAcgUGAACCACa-CGCCGuUCGAg -3'
miRNA:   3'- uCUuaGCUUGGUGacGCGGCuAGCUa -5'
24064 5' -52.6 NC_005262.1 + 30620 0.67 0.837801
Target:  5'- -aGAUCGAGCCGC--CGCCGAcgcUCGGc -3'
miRNA:   3'- ucUUAGCUUGGUGacGCGGCU---AGCUa -5'
24064 5' -52.6 NC_005262.1 + 60354 0.67 0.837801
Target:  5'- -aGGUCGGAcauCCACgaUGCGCCGGUCu-- -3'
miRNA:   3'- ucUUAGCUU---GGUG--ACGCGGCUAGcua -5'
24064 5' -52.6 NC_005262.1 + 40739 0.67 0.835105
Target:  5'- uGggUCGggUCGCUGaCGCCGugcccguggccgggGUCGu- -3'
miRNA:   3'- uCuuAGCuuGGUGAC-GCGGC--------------UAGCua -5'
24064 5' -52.6 NC_005262.1 + 3020 0.67 0.819459
Target:  5'- uAGAG-CGAgcgaucaccACUACUGCGCCGAccaGAUg -3'
miRNA:   3'- -UCUUaGCU---------UGGUGACGCGGCUag-CUA- -5'
24064 5' -52.6 NC_005262.1 + 35989 0.67 0.800307
Target:  5'- cGGGAUCGugcguuCCAC-GUGCCGcgCGAg -3'
miRNA:   3'- -UCUUAGCuu----GGUGaCGCGGCuaGCUa -5'
24064 5' -52.6 NC_005262.1 + 12574 0.68 0.759923
Target:  5'- --cGUCGAGCUGCUGCuGCCGccggCGAg -3'
miRNA:   3'- ucuUAGCUUGGUGACG-CGGCua--GCUa -5'
24064 5' -52.6 NC_005262.1 + 50393 0.69 0.738876
Target:  5'- cGAcgCGAACCGC-GCGgCGAUCa-- -3'
miRNA:   3'- uCUuaGCUUGGUGaCGCgGCUAGcua -5'
24064 5' -52.6 NC_005262.1 + 60067 0.69 0.72818
Target:  5'- gAGGAUCGggUgCAUgcGCGCCuGAUCGAg -3'
miRNA:   3'- -UCUUAGCuuG-GUGa-CGCGG-CUAGCUa -5'
24064 5' -52.6 NC_005262.1 + 34024 0.69 0.72818
Target:  5'- ----cCGGGCCGCaucgUGCGCCGcGUCGAUc -3'
miRNA:   3'- ucuuaGCUUGGUG----ACGCGGC-UAGCUA- -5'
24064 5' -52.6 NC_005262.1 + 28432 0.69 0.727105
Target:  5'- cGAAUCGGGCCGCgccgugcucgccgUGuCGCCGAU-GAUg -3'
miRNA:   3'- uCUUAGCUUGGUG-------------AC-GCGGCUAgCUA- -5'
24064 5' -52.6 NC_005262.1 + 43468 0.69 0.717386
Target:  5'- cGAGUCGAGCCGCUucGUGgCGG-CGAc -3'
miRNA:   3'- uCUUAGCUUGGUGA--CGCgGCUaGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.