Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24081 | 3' | -59.7 | NC_005262.1 | + | 36315 | 0.66 | 0.565979 |
Target: 5'- uUCGGUGggGGGCcGGU--GCGcucgCCGGc -3' miRNA: 3'- -GGCCGCuuCCCGaCCGucUGCa---GGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 18590 | 0.66 | 0.556714 |
Target: 5'- cCCGGCGGacaugccgccugcgAGGGCaGGCcGuuacccauguugaucGCGUCCGc -3' miRNA: 3'- -GGCCGCU--------------UCCCGaCCGuC---------------UGCAGGCu -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 61362 | 0.66 | 0.545449 |
Target: 5'- aCCGGCGAGuGGCaGGCAG----CCGAg -3' miRNA: 3'- -GGCCGCUUcCCGaCCGUCugcaGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 10856 | 0.66 | 0.545449 |
Target: 5'- gCCGGCGAAGcccaGGCgGcGCAGGcCGUCguaGAu -3' miRNA: 3'- -GGCCGCUUC----CCGaC-CGUCU-GCAGg--CU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 6632 | 0.66 | 0.535273 |
Target: 5'- gCGGCGAGGGGUcgccGgGGAUGUcgaCCGAc -3' miRNA: 3'- gGCCGCUUCCCGac--CgUCUGCA---GGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 11893 | 0.66 | 0.535273 |
Target: 5'- gCCGGCGAAGcGGUcGGU-GcCGUUCGGc -3' miRNA: 3'- -GGCCGCUUC-CCGaCCGuCuGCAGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 35594 | 0.66 | 0.532233 |
Target: 5'- cUCGGCGc-GGGCUcGGCacagauggcguugcAGuCGUCCGGc -3' miRNA: 3'- -GGCCGCuuCCCGA-CCG--------------UCuGCAGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 13767 | 0.66 | 0.524158 |
Target: 5'- gCCGGCGccggcucGGGCUucacuucGGUGGGCG-CCGGc -3' miRNA: 3'- -GGCCGCuu-----CCCGA-------CCGUCUGCaGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 34789 | 0.67 | 0.505173 |
Target: 5'- aUCGGUGAAGGugUGGCuucgccucaAGcCGUCCGAg -3' miRNA: 3'- -GGCCGCUUCCcgACCG---------UCuGCAGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 4835 | 0.67 | 0.505173 |
Target: 5'- gCCGGCGGccGGCUGGUucgacugcuGCGcgCCGAc -3' miRNA: 3'- -GGCCGCUucCCGACCGuc-------UGCa-GGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 5179 | 0.67 | 0.505173 |
Target: 5'- gCCGGCGucgcGGGCgcgGGCGcggccGGCGcgaCCGAg -3' miRNA: 3'- -GGCCGCuu--CCCGa--CCGU-----CUGCa--GGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 60601 | 0.67 | 0.4953 |
Target: 5'- cCCGGCGAuacAGGGCacGGCGaACG-CCa- -3' miRNA: 3'- -GGCCGCU---UCCCGa-CCGUcUGCaGGcu -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 15718 | 0.67 | 0.4953 |
Target: 5'- gUCGGCGccGGGCggcucgucgcGGCAGguGCGaCCGAc -3' miRNA: 3'- -GGCCGCuuCCCGa---------CCGUC--UGCaGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 54809 | 0.67 | 0.475824 |
Target: 5'- gCGGcCGAuuuaugcgcGGGGUUGGCuGGC-UCCGGa -3' miRNA: 3'- gGCC-GCU---------UCCCGACCGuCUGcAGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 207 | 0.67 | 0.472935 |
Target: 5'- gCCGGCG-GGGGC-GGCGGAgccagacacgcuacCG-CCGGc -3' miRNA: 3'- -GGCCGCuUCCCGaCCGUCU--------------GCaGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 29644 | 0.67 | 0.466229 |
Target: 5'- gCCGGCGAcggccGGCgGGUAGACGUa-GAa -3' miRNA: 3'- -GGCCGCUuc---CCGaCCGUCUGCAggCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 30857 | 0.68 | 0.447348 |
Target: 5'- gCCGGUcggagcgaucguGAAGGcGCUGGCGaGCGUCgCGc -3' miRNA: 3'- -GGCCG------------CUUCC-CGACCGUcUGCAG-GCu -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 21014 | 0.68 | 0.438068 |
Target: 5'- gCCGGagaCGAuguAGGGCUGGC---CGUCCGu -3' miRNA: 3'- -GGCC---GCU---UCCCGACCGucuGCAGGCu -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 17265 | 0.68 | 0.438068 |
Target: 5'- gCCGGCGccgcgcuGGGCUgcugcgcgGGCAGggGCGUCgCGGu -3' miRNA: 3'- -GGCCGCuu-----CCCGA--------CCGUC--UGCAG-GCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 36476 | 0.68 | 0.428899 |
Target: 5'- gCGcGCGA--GGCUGGCGGACaUCgCGAa -3' miRNA: 3'- gGC-CGCUucCCGACCGUCUGcAG-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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