miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24081 5' -55.8 NC_005262.1 + 54398 0.98 0.006264
Target:  5'- cUGUCGGGCaACGUCGUGCGCAAGCUCg -3'
miRNA:   3'- -ACAGCCUGcUGCAGCACGCGUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 2029 0.76 0.233011
Target:  5'- gGUCGGuCGGCG-CGUGCuaCGAGCUCu -3'
miRNA:   3'- aCAGCCuGCUGCaGCACGc-GUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 32898 0.76 0.233011
Target:  5'- cGUCGGccaagccgGCGGCGUCGcacGCGCGAcGCUCc -3'
miRNA:   3'- aCAGCC--------UGCUGCAGCa--CGCGUU-CGAG- -5'
24081 5' -55.8 NC_005262.1 + 33323 0.74 0.27824
Target:  5'- aGUCGGACGcaacuGCGUCGcUGCGC-GGCa- -3'
miRNA:   3'- aCAGCCUGC-----UGCAGC-ACGCGuUCGag -5'
24081 5' -55.8 NC_005262.1 + 48766 0.74 0.27824
Target:  5'- gGUCGGcGCGaacauggcaGCGcaggaCGUGCGCGAGCUCa -3'
miRNA:   3'- aCAGCC-UGC---------UGCa----GCACGCGUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 40365 0.74 0.292388
Target:  5'- cGUCGGACGGC-UCGaUGaCGC-GGCUCa -3'
miRNA:   3'- aCAGCCUGCUGcAGC-AC-GCGuUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 2665 0.74 0.306343
Target:  5'- cGcCGGGCGGCGUCcugGCcgccguaGCAAGCUCa -3'
miRNA:   3'- aCaGCCUGCUGCAGca-CG-------CGUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 30029 0.72 0.362952
Target:  5'- aGUCGGACGACGaCGcaGCaGCGGGCa- -3'
miRNA:   3'- aCAGCCUGCUGCaGCa-CG-CGUUCGag -5'
24081 5' -55.8 NC_005262.1 + 5173 0.72 0.362952
Target:  5'- gUGaCGGcCGGCGUCGcggGCGCGGGCg- -3'
miRNA:   3'- -ACaGCCuGCUGCAGCa--CGCGUUCGag -5'
24081 5' -55.8 NC_005262.1 + 40457 0.72 0.362952
Target:  5'- cGcCGGcCGugGUCGaGCGCGuGCUCg -3'
miRNA:   3'- aCaGCCuGCugCAGCaCGCGUuCGAG- -5'
24081 5' -55.8 NC_005262.1 + 17 0.72 0.397897
Target:  5'- cUGcgCGGGCGGCGUCGaUG-GCAuGCUCc -3'
miRNA:   3'- -ACa-GCCUGCUGCAGC-ACgCGUuCGAG- -5'
24081 5' -55.8 NC_005262.1 + 13730 0.72 0.406964
Target:  5'- gGUCGGugGcACGcCGUGC-CAGGCa- -3'
miRNA:   3'- aCAGCCugC-UGCaGCACGcGUUCGag -5'
24081 5' -55.8 NC_005262.1 + 7886 0.71 0.434926
Target:  5'- --aCGGuCGACGUacUGCGCGAGCUg -3'
miRNA:   3'- acaGCCuGCUGCAgcACGCGUUCGAg -5'
24081 5' -55.8 NC_005262.1 + 29993 0.7 0.483883
Target:  5'- cGUCcuGGAgGACGUUGcccGCGCGAGCg- -3'
miRNA:   3'- aCAG--CCUgCUGCAGCa--CGCGUUCGag -5'
24081 5' -55.8 NC_005262.1 + 32830 0.7 0.493993
Target:  5'- aUGUCcGGCGACGUCG-GCGaCAAGgUUu -3'
miRNA:   3'- -ACAGcCUGCUGCAGCaCGC-GUUCgAG- -5'
24081 5' -55.8 NC_005262.1 + 46725 0.7 0.504198
Target:  5'- cGaCGGGCGcgccuaucgGCGcCGUGCGCGcgacgAGCUCg -3'
miRNA:   3'- aCaGCCUGC---------UGCaGCACGCGU-----UCGAG- -5'
24081 5' -55.8 NC_005262.1 + 2179 0.7 0.504198
Target:  5'- uUGUCGGACGGCuG-CGUcuCGUAGGCUUc -3'
miRNA:   3'- -ACAGCCUGCUG-CaGCAc-GCGUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 30764 0.69 0.524873
Target:  5'- cGUCGGGCGguACGUCagcaucagGCGCA-GCUUg -3'
miRNA:   3'- aCAGCCUGC--UGCAGca------CGCGUuCGAG- -5'
24081 5' -55.8 NC_005262.1 + 27062 0.69 0.524873
Target:  5'- cG-CGcuACG-CGuUCGUGCGCGAGCUCg -3'
miRNA:   3'- aCaGCc-UGCuGC-AGCACGCGUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 16630 0.69 0.535332
Target:  5'- --cUGGGCGAuauCGUCGUgcuGCGCGAGCa- -3'
miRNA:   3'- acaGCCUGCU---GCAGCA---CGCGUUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.