Results 1 - 20 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 34003 | 0.67 | 0.679405 |
Target: 5'- aUGggcgCGGACGGCGugacgccgggccgcaUCGUGCGCc-GCgUCg -3' miRNA: 3'- -ACa---GCCUGCUGC---------------AGCACGCGuuCG-AG- -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 16630 | 0.69 | 0.535332 |
Target: 5'- --cUGGGCGAuauCGUCGUgcuGCGCGAGCa- -3' miRNA: 3'- acaGCCUGCU---GCAGCA---CGCGUUCGag -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 5072 | 0.69 | 0.556459 |
Target: 5'- --cCGcGGCGGCGgcgCGUGCGaCcGGCUCg -3' miRNA: 3'- acaGC-CUGCUGCa--GCACGC-GuUCGAG- -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 21395 | 0.68 | 0.588569 |
Target: 5'- ---aGGAUGACGUCuUGCGgcacuggucCGAGCUCg -3' miRNA: 3'- acagCCUGCUGCAGcACGC---------GUUCGAG- -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 25537 | 0.68 | 0.588569 |
Target: 5'- cGUC--GCGACGUcCGUGCGCGgcGGCa- -3' miRNA: 3'- aCAGccUGCUGCA-GCACGCGU--UCGag -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 46245 | 0.68 | 0.588569 |
Target: 5'- -aUCGGuauCGGCG-CGUucGCGCAagGGCUCa -3' miRNA: 3'- acAGCCu--GCUGCaGCA--CGCGU--UCGAG- -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 32306 | 0.67 | 0.653508 |
Target: 5'- cGUCGaGGCaGCG-CGUGCGCu-GUUCa -3' miRNA: 3'- aCAGC-CUGcUGCaGCACGCGuuCGAG- -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 56882 | 0.67 | 0.66432 |
Target: 5'- gGcCGGACGcAgGUCGaGCGCGAcaacacGCUCg -3' miRNA: 3'- aCaGCCUGC-UgCAGCaCGCGUU------CGAG- -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 33899 | 0.67 | 0.670794 |
Target: 5'- cGUCGGcCGGCGgcccgaucgguagCGgcgGUGCcGAGCUCg -3' miRNA: 3'- aCAGCCuGCUGCa------------GCa--CGCG-UUCGAG- -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 27062 | 0.69 | 0.524873 |
Target: 5'- cG-CGcuACG-CGuUCGUGCGCGAGCUCg -3' miRNA: 3'- aCaGCc-UGCuGC-AGCACGCGUUCGAG- -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 2179 | 0.7 | 0.504198 |
Target: 5'- uUGUCGGACGGCuG-CGUcuCGUAGGCUUc -3' miRNA: 3'- -ACAGCCUGCUG-CaGCAc-GCGUUCGAG- -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 32830 | 0.7 | 0.493993 |
Target: 5'- aUGUCcGGCGACGUCG-GCGaCAAGgUUu -3' miRNA: 3'- -ACAGcCUGCUGCAGCaCGC-GUUCgAG- -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 32898 | 0.76 | 0.233011 |
Target: 5'- cGUCGGccaagccgGCGGCGUCGcacGCGCGAcGCUCc -3' miRNA: 3'- aCAGCC--------UGCUGCAGCa--CGCGUU-CGAG- -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 33323 | 0.74 | 0.27824 |
Target: 5'- aGUCGGACGcaacuGCGUCGcUGCGC-GGCa- -3' miRNA: 3'- aCAGCCUGC-----UGCAGC-ACGCGuUCGag -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 48766 | 0.74 | 0.27824 |
Target: 5'- gGUCGGcGCGaacauggcaGCGcaggaCGUGCGCGAGCUCa -3' miRNA: 3'- aCAGCC-UGC---------UGCa----GCACGCGUUCGAG- -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 2665 | 0.74 | 0.306343 |
Target: 5'- cGcCGGGCGGCGUCcugGCcgccguaGCAAGCUCa -3' miRNA: 3'- aCaGCCUGCUGCAGca-CG-------CGUUCGAG- -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 30029 | 0.72 | 0.362952 |
Target: 5'- aGUCGGACGACGaCGcaGCaGCGGGCa- -3' miRNA: 3'- aCAGCCUGCUGCaGCa-CG-CGUUCGag -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 5173 | 0.72 | 0.362952 |
Target: 5'- gUGaCGGcCGGCGUCGcggGCGCGGGCg- -3' miRNA: 3'- -ACaGCCuGCUGCAGCa--CGCGUUCGag -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 17 | 0.72 | 0.397897 |
Target: 5'- cUGcgCGGGCGGCGUCGaUG-GCAuGCUCc -3' miRNA: 3'- -ACa-GCCUGCUGCAGC-ACgCGUuCGAG- -5' |
|||||||
24081 | 5' | -55.8 | NC_005262.1 | + | 13730 | 0.72 | 0.406964 |
Target: 5'- gGUCGGugGcACGcCGUGC-CAGGCa- -3' miRNA: 3'- aCAGCCugC-UGCaGCACGcGUUCGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home