miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24081 5' -55.8 NC_005262.1 + 17 0.72 0.397897
Target:  5'- cUGcgCGGGCGGCGUCGaUG-GCAuGCUCc -3'
miRNA:   3'- -ACa-GCCUGCUGCAGC-ACgCGUuCGAG- -5'
24081 5' -55.8 NC_005262.1 + 2029 0.76 0.233011
Target:  5'- gGUCGGuCGGCG-CGUGCuaCGAGCUCu -3'
miRNA:   3'- aCAGCCuGCUGCaGCACGc-GUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 2179 0.7 0.504198
Target:  5'- uUGUCGGACGGCuG-CGUcuCGUAGGCUUc -3'
miRNA:   3'- -ACAGCCUGCUG-CaGCAc-GCGUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 2255 0.66 0.738599
Target:  5'- -cUCGGGCcGCGUCGaugacggcccGCGCAAGUUUc -3'
miRNA:   3'- acAGCCUGcUGCAGCa---------CGCGUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 2665 0.74 0.306343
Target:  5'- cGcCGGGCGGCGUCcugGCcgccguaGCAAGCUCa -3'
miRNA:   3'- aCaGCCUGCUGCAGca-CG-------CGUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 4387 0.66 0.738599
Target:  5'- gGUCGaGcguugcgcguGCGAUGUCGcgcgccugcUGCGCGAGCg- -3'
miRNA:   3'- aCAGC-C----------UGCUGCAGC---------ACGCGUUCGag -5'
24081 5' -55.8 NC_005262.1 + 5072 0.69 0.556459
Target:  5'- --cCGcGGCGGCGgcgCGUGCGaCcGGCUCg -3'
miRNA:   3'- acaGC-CUGCUGCa--GCACGC-GuUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 5173 0.72 0.362952
Target:  5'- gUGaCGGcCGGCGUCGcggGCGCGGGCg- -3'
miRNA:   3'- -ACaGCCuGCUGCAGCa--CGCGUUCGag -5'
24081 5' -55.8 NC_005262.1 + 7886 0.71 0.434926
Target:  5'- --aCGGuCGACGUacUGCGCGAGCUg -3'
miRNA:   3'- acaGCCuGCUGCAgcACGCGUUCGAg -5'
24081 5' -55.8 NC_005262.1 + 10782 0.66 0.707172
Target:  5'- cGcCGGGCGcGCGguacUGcUGCGCGAGCUg -3'
miRNA:   3'- aCaGCCUGC-UGCa---GC-ACGCGUUCGAg -5'
24081 5' -55.8 NC_005262.1 + 12438 0.67 0.685846
Target:  5'- cG-CGGACGGCG-CgGUGC-CGAGCUg -3'
miRNA:   3'- aCaGCCUGCUGCaG-CACGcGUUCGAg -5'
24081 5' -55.8 NC_005262.1 + 12883 0.66 0.748881
Target:  5'- --aCGG-UGACGcUCGUGCGCAucAGCc- -3'
miRNA:   3'- acaGCCuGCUGC-AGCACGCGU--UCGag -5'
24081 5' -55.8 NC_005262.1 + 13730 0.72 0.406964
Target:  5'- gGUCGGugGcACGcCGUGC-CAGGCa- -3'
miRNA:   3'- aCAGCCugC-UGCaGCACGcGUUCGag -5'
24081 5' -55.8 NC_005262.1 + 13790 0.68 0.610166
Target:  5'- -uUCGGugGGCGcCG-GCGC-GGCUUc -3'
miRNA:   3'- acAGCCugCUGCaGCaCGCGuUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 14915 0.66 0.717733
Target:  5'- uUGcCGGucACGACGUCGgacaguUGCGCGGGgUg -3'
miRNA:   3'- -ACaGCC--UGCUGCAGC------ACGCGUUCgAg -5'
24081 5' -55.8 NC_005262.1 + 16238 0.67 0.696539
Target:  5'- cGUCGGGCGACGUCGccuuuuUGUaCuGGC-Cg -3'
miRNA:   3'- aCAGCCUGCUGCAGC------ACGcGuUCGaG- -5'
24081 5' -55.8 NC_005262.1 + 16307 0.66 0.728213
Target:  5'- cGUCGGAguagcCGgcguucuucagcGCGUCGguuuucGCuGCGAGCUCg -3'
miRNA:   3'- aCAGCCU-----GC------------UGCAGCa-----CG-CGUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 16630 0.69 0.535332
Target:  5'- --cUGGGCGAuauCGUCGUgcuGCGCGAGCa- -3'
miRNA:   3'- acaGCCUGCU---GCAGCA---CGCGUUCGag -5'
24081 5' -55.8 NC_005262.1 + 17188 0.67 0.696539
Target:  5'- cGUCGGGCGggaucugugGCGUC-UGCgGCGAGgaCg -3'
miRNA:   3'- aCAGCCUGC---------UGCAGcACG-CGUUCgaG- -5'
24081 5' -55.8 NC_005262.1 + 20091 0.66 0.748881
Target:  5'- uUGUCGGugaGCG-CGUCGccGCGCGaauucggcccGGCUUg -3'
miRNA:   3'- -ACAGCC---UGCuGCAGCa-CGCGU----------UCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.