miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 5' -53.6 NC_005262.1 + 50173 0.66 0.820574
Target:  5'- uGCGCuACC-UGACGAagCAGGcCAAGCUc -3'
miRNA:   3'- -CGCG-UGGuGCUGCUg-GUCUuGUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 30845 0.66 0.820574
Target:  5'- cGCGCAUCgucgacgucgggAUGACGGCCgAGGAgucgcCGAGCg -3'
miRNA:   3'- -CGCGUGG------------UGCUGCUGG-UCUU-----GUUCGa -5'
24091 5' -53.6 NC_005262.1 + 29986 0.66 0.820574
Target:  5'- -gGCACCACgGACGACgccaacaAGGGCA-GCg -3'
miRNA:   3'- cgCGUGGUG-CUGCUGg------UCUUGUuCGa -5'
24091 5' -53.6 NC_005262.1 + 62903 0.66 0.815002
Target:  5'- aGCGCGCCgACGAgcUGGCgCgcaaucucauggcaaAGGACGAGCg -3'
miRNA:   3'- -CGCGUGG-UGCU--GCUG-G---------------UCUUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 8257 0.66 0.820574
Target:  5'- aGCGCGCgaaaGCaGCGGCC-GAGgAAGCUg -3'
miRNA:   3'- -CGCGUGg---UGcUGCUGGuCUUgUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 43144 0.66 0.820574
Target:  5'- cGCGacguuCUACGACaucACCgAGGGCAAGCUg -3'
miRNA:   3'- -CGCgu---GGUGCUGc--UGG-UCUUGUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 14508 0.66 0.829701
Target:  5'- cCGCGCUACaaGGCGAUCGGcAACAgcauGGCa -3'
miRNA:   3'- cGCGUGGUG--CUGCUGGUC-UUGU----UCGa -5'
24091 5' -53.6 NC_005262.1 + 29164 0.66 0.820574
Target:  5'- cGCGCgACCAUgcgucaGGCGGCCGucGcCGAGCUg -3'
miRNA:   3'- -CGCG-UGGUG------CUGCUGGUcuU-GUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 31072 0.66 0.829701
Target:  5'- aCGCGCU-CGcCGACCugaAGGGCGAGCc -3'
miRNA:   3'- cGCGUGGuGCuGCUGG---UCUUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 38560 0.66 0.829701
Target:  5'- -gGCACCGCcGCgGGCCGGAugAaagaAGCa -3'
miRNA:   3'- cgCGUGGUGcUG-CUGGUCUugU----UCGa -5'
24091 5' -53.6 NC_005262.1 + 59071 0.66 0.820574
Target:  5'- aGCGCAUCAagaagcUGACgGGCguGAAgGAGCUc -3'
miRNA:   3'- -CGCGUGGU------GCUG-CUGguCUUgUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 44154 0.66 0.811248
Target:  5'- aCGCGCgCGCGAuCGGgCAGGagcgcggcgGCGAGCUc -3'
miRNA:   3'- cGCGUG-GUGCU-GCUgGUCU---------UGUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 10465 0.66 0.820574
Target:  5'- gGCGgaaGCCGCGACGACagCGGcGACcAGCa -3'
miRNA:   3'- -CGCg--UGGUGCUGCUG--GUC-UUGuUCGa -5'
24091 5' -53.6 NC_005262.1 + 35952 0.66 0.829701
Target:  5'- cGCGCcuauCCGCGugGugCcguuuGAACuGGCa -3'
miRNA:   3'- -CGCGu---GGUGCugCugGu----CUUGuUCGa -5'
24091 5' -53.6 NC_005262.1 + 17492 0.66 0.820574
Target:  5'- cGCGCGCCGCGcGCGACgCGucGAUcGGCa -3'
miRNA:   3'- -CGCGUGGUGC-UGCUG-GUc-UUGuUCGa -5'
24091 5' -53.6 NC_005262.1 + 53452 0.66 0.820574
Target:  5'- aGCGCGgCGcCGGCGuCgAGGACAacGGCg -3'
miRNA:   3'- -CGCGUgGU-GCUGCuGgUCUUGU--UCGa -5'
24091 5' -53.6 NC_005262.1 + 17601 0.66 0.829701
Target:  5'- gGCGCAgCGCG-CGgaGCUGGAGCGccAGCa -3'
miRNA:   3'- -CGCGUgGUGCuGC--UGGUCUUGU--UCGa -5'
24091 5' -53.6 NC_005262.1 + 11358 0.66 0.811248
Target:  5'- cGCGCGgCACGuCGAC--GAugAAGCg -3'
miRNA:   3'- -CGCGUgGUGCuGCUGguCUugUUCGa -5'
24091 5' -53.6 NC_005262.1 + 60433 0.66 0.829701
Target:  5'- cGCGaACCAa-GCGACCgAGAACGcGCUg -3'
miRNA:   3'- -CGCgUGGUgcUGCUGG-UCUUGUuCGA- -5'
24091 5' -53.6 NC_005262.1 + 29297 0.66 0.811248
Target:  5'- aGCGCAuCCGCGccgugaACGGCCAGAAagacccggauCAGGaCg -3'
miRNA:   3'- -CGCGU-GGUGC------UGCUGGUCUU----------GUUC-Ga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.