miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 5' -53.6 NC_005262.1 + 11662 0.72 0.503314
Target:  5'- cGCGCugCACGcUGGCCGGca-GAGCUu -3'
miRNA:   3'- -CGCGugGUGCuGCUGGUCuugUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 51555 0.74 0.386515
Target:  5'- cGCGUACCACGugGucgcGCgCGGAGCuuGAGCg -3'
miRNA:   3'- -CGCGUGGUGCugC----UG-GUCUUG--UUCGa -5'
24091 5' -53.6 NC_005262.1 + 10802 0.74 0.404734
Target:  5'- uGCGCgagcuGCCGCGACGAUCAcGACcAGCg -3'
miRNA:   3'- -CGCG-----UGGUGCUGCUGGUcUUGuUCGa -5'
24091 5' -53.6 NC_005262.1 + 10499 0.73 0.433055
Target:  5'- aGCGcCAgCAUGGCGGCCAGcAGCAGcGCg -3'
miRNA:   3'- -CGC-GUgGUGCUGCUGGUC-UUGUU-CGa -5'
24091 5' -53.6 NC_005262.1 + 61244 0.73 0.442749
Target:  5'- gGCGCACCuacacCGGCGGCCuGGGCcAGUUc -3'
miRNA:   3'- -CGCGUGGu----GCUGCUGGuCUUGuUCGA- -5'
24091 5' -53.6 NC_005262.1 + 30229 0.72 0.471533
Target:  5'- gGCGaCAUCACGGCGAaggaguaUCAGAGCcAGCUc -3'
miRNA:   3'- -CGC-GUGGUGCUGCU-------GGUCUUGuUCGA- -5'
24091 5' -53.6 NC_005262.1 + 16005 0.72 0.472542
Target:  5'- aGCGCGgCAcCGACGAC--GAGCAGGCg -3'
miRNA:   3'- -CGCGUgGU-GCUGCUGguCUUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 5500 0.72 0.482697
Target:  5'- aUGUagGCCGCGACGACCGGAcCGGGa- -3'
miRNA:   3'- cGCG--UGGUGCUGCUGGUCUuGUUCga -5'
24091 5' -53.6 NC_005262.1 + 14227 0.72 0.491926
Target:  5'- gGCGCgaugucgACCACGcACGAgCAGGACGcAGCg -3'
miRNA:   3'- -CGCG-------UGGUGC-UGCUgGUCUUGU-UCGa -5'
24091 5' -53.6 NC_005262.1 + 45390 0.75 0.335198
Target:  5'- -aGCAUCugGGCGGCgCAGcAGCAGGCa -3'
miRNA:   3'- cgCGUGGugCUGCUG-GUC-UUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 43069 0.75 0.327144
Target:  5'- cGCGCGCCGCGGCagcuucaucaucGACCuGAcCGGGCa -3'
miRNA:   3'- -CGCGUGGUGCUG------------CUGGuCUuGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 46569 0.76 0.30385
Target:  5'- aCGC-CCACGACGACCAcGACGccAGCg -3'
miRNA:   3'- cGCGuGGUGCUGCUGGUcUUGU--UCGa -5'
24091 5' -53.6 NC_005262.1 + 50351 0.82 0.133403
Target:  5'- aGCGC-CCGCGACGACCGcGAGCGGcGCa -3'
miRNA:   3'- -CGCGuGGUGCUGCUGGU-CUUGUU-CGa -5'
24091 5' -53.6 NC_005262.1 + 24772 0.81 0.157477
Target:  5'- -aGCACCGCGGCGAgCCGG-GCGAGCa -3'
miRNA:   3'- cgCGUGGUGCUGCU-GGUCuUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 49236 0.8 0.185411
Target:  5'- cGCGCAguCCGCGcgcgagguccGCGACCAGAucaACGAGCUg -3'
miRNA:   3'- -CGCGU--GGUGC----------UGCUGGUCU---UGUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 41195 0.78 0.229385
Target:  5'- uGCGCGCC-CGGCGACCGcuuCGAGCa -3'
miRNA:   3'- -CGCGUGGuGCUGCUGGUcuuGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 56563 0.78 0.234849
Target:  5'- gGCGCaucauccGCCAgGGCaACCAGAACAAGCa -3'
miRNA:   3'- -CGCG-------UGGUgCUGcUGGUCUUGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 11569 0.77 0.254511
Target:  5'- cGCGCGCUgcuaugccgGCGGCGGCCAGcgcuCGAGCg -3'
miRNA:   3'- -CGCGUGG---------UGCUGCUGGUCuu--GUUCGa -5'
24091 5' -53.6 NC_005262.1 + 43946 0.77 0.261135
Target:  5'- aCGCugCGCGACGACguGAGCAugaucuacgaGGCUc -3'
miRNA:   3'- cGCGugGUGCUGCUGguCUUGU----------UCGA- -5'
24091 5' -53.6 NC_005262.1 + 28614 0.77 0.274805
Target:  5'- uGCGCGgCAUgcagGACGACguGAACAAGCg -3'
miRNA:   3'- -CGCGUgGUG----CUGCUGguCUUGUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.