miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 5' -53.6 NC_005262.1 + 490 0.66 0.855799
Target:  5'- cGCGCGuguuCCACGuCGACgCcGAGCcAGCa -3'
miRNA:   3'- -CGCGU----GGUGCuGCUG-GuCUUGuUCGa -5'
24091 5' -53.6 NC_005262.1 + 2481 0.69 0.665952
Target:  5'- cGCGUgguGCCGCGcuugGCGACCAGcAGCAacccgauagAGCg -3'
miRNA:   3'- -CGCG---UGGUGC----UGCUGGUC-UUGU---------UCGa -5'
24091 5' -53.6 NC_005262.1 + 2660 0.67 0.801734
Target:  5'- cGCgGCGCCggGCGGCGuccuggccGCCGuAGCAAGCUc -3'
miRNA:   3'- -CG-CGUGG--UGCUGC--------UGGUcUUGUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 3637 0.68 0.751718
Target:  5'- aGCGCcuUCACGGCGGCCGGGuACuucGCc -3'
miRNA:   3'- -CGCGu-GGUGCUGCUGGUCU-UGuu-CGa -5'
24091 5' -53.6 NC_005262.1 + 4553 0.67 0.792042
Target:  5'- cGUGCGCgCGCGGCGcaucucgcGCCAGcGGCGGcGCUg -3'
miRNA:   3'- -CGCGUG-GUGCUGC--------UGGUC-UUGUU-CGA- -5'
24091 5' -53.6 NC_005262.1 + 5160 0.71 0.534925
Target:  5'- gGCGCGCUGaucggUGACGGCCGGcgucGCGGGCg -3'
miRNA:   3'- -CGCGUGGU-----GCUGCUGGUCu---UGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 5500 0.72 0.482697
Target:  5'- aUGUagGCCGCGACGACCGGAcCGGGa- -3'
miRNA:   3'- cGCG--UGGUGCUGCUGGUCUuGUUCga -5'
24091 5' -53.6 NC_005262.1 + 7261 0.66 0.838621
Target:  5'- cGCGCugCuCGACGgauGCCGGGAaccacGGCg -3'
miRNA:   3'- -CGCGugGuGCUGC---UGGUCUUgu---UCGa -5'
24091 5' -53.6 NC_005262.1 + 7365 0.7 0.607648
Target:  5'- gGCGuCGCCACGACGGUCGGGccguccuugaucuuGCAgaGGCUg -3'
miRNA:   3'- -CGC-GUGGUGCUGCUGGUCU--------------UGU--UCGA- -5'
24091 5' -53.6 NC_005262.1 + 7936 0.69 0.665952
Target:  5'- aGCGCA-CGCGGCGcAUCAGcuCGGGCa -3'
miRNA:   3'- -CGCGUgGUGCUGC-UGGUCuuGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 8147 0.67 0.76201
Target:  5'- gGCGUGCCggACG-CGGCCAcGAGCGcGCg -3'
miRNA:   3'- -CGCGUGG--UGCuGCUGGU-CUUGUuCGa -5'
24091 5' -53.6 NC_005262.1 + 8224 0.72 0.513766
Target:  5'- cGCGCGCUGCGAgcCGGCCGGGuCGAuGCc -3'
miRNA:   3'- -CGCGUGGUGCU--GCUGGUCUuGUU-CGa -5'
24091 5' -53.6 NC_005262.1 + 8257 0.66 0.820574
Target:  5'- aGCGCGCgaaaGCaGCGGCC-GAGgAAGCUg -3'
miRNA:   3'- -CGCGUGg---UGcUGCUGGuCUUgUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 9369 0.7 0.621949
Target:  5'- gGCGCG-CGCGGCGGCCuGcgccuccGCGAGCUu -3'
miRNA:   3'- -CGCGUgGUGCUGCUGGuCu------UGUUCGA- -5'
24091 5' -53.6 NC_005262.1 + 9515 0.74 0.414045
Target:  5'- gGCGCGCCACGuCGuCgAGGuCGAGCa -3'
miRNA:   3'- -CGCGUGGUGCuGCuGgUCUuGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 10083 0.67 0.782184
Target:  5'- -aGCGCCACGgccuucgacGCGGCCGGGuucuGCGcgcccGGCUg -3'
miRNA:   3'- cgCGUGGUGC---------UGCUGGUCU----UGU-----UCGA- -5'
24091 5' -53.6 NC_005262.1 + 10224 0.66 0.855799
Target:  5'- cCGUcUCGCGACGACCgaucgauacaAGGACAAgGCg -3'
miRNA:   3'- cGCGuGGUGCUGCUGG----------UCUUGUU-CGa -5'
24091 5' -53.6 NC_005262.1 + 10435 0.66 0.847323
Target:  5'- gGCGCAUgGCGcCGAUCAGGuucGCGcggucGGCg -3'
miRNA:   3'- -CGCGUGgUGCuGCUGGUCU---UGU-----UCGa -5'
24091 5' -53.6 NC_005262.1 + 10465 0.66 0.820574
Target:  5'- gGCGgaaGCCGCGACGACagCGGcGACcAGCa -3'
miRNA:   3'- -CGCg--UGGUGCUGCUG--GUC-UUGuUCGa -5'
24091 5' -53.6 NC_005262.1 + 10499 0.73 0.433055
Target:  5'- aGCGcCAgCAUGGCGGCCAGcAGCAGcGCg -3'
miRNA:   3'- -CGC-GUgGUGCUGCUGGUC-UUGUU-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.