miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24092 3' -55.8 NC_005262.1 + 57061 1.11 0.000839
Target:  5'- gGCUGAUACCGCCGAGCAGAUCGGCGAg -3'
miRNA:   3'- -CGACUAUGGCGGCUCGUCUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 10122 0.8 0.120749
Target:  5'- gGCUGAUagauGCCcUCGGGCAGGUUGGCGAu -3'
miRNA:   3'- -CGACUA----UGGcGGCUCGUCUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 14319 0.79 0.138504
Target:  5'- gGCgGA-ACCGCCGAGCuGggCGGCGAa -3'
miRNA:   3'- -CGaCUaUGGCGGCUCGuCuaGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 45840 0.76 0.212382
Target:  5'- cGCUGAUgauGCCGaugcaCGAGCAGAUgaaGGCGGa -3'
miRNA:   3'- -CGACUA---UGGCg----GCUCGUCUAg--CCGCU- -5'
24092 3' -55.8 NC_005262.1 + 10574 0.75 0.241633
Target:  5'- cGCaGcGUACCGCgGAGCAGcgCGGCGc -3'
miRNA:   3'- -CGaC-UAUGGCGgCUCGUCuaGCCGCu -5'
24092 3' -55.8 NC_005262.1 + 6585 0.75 0.274166
Target:  5'- cGC-GAUGCCGCCGAccgGCAGGUCcgGGuCGAg -3'
miRNA:   3'- -CGaCUAUGGCGGCU---CGUCUAG--CC-GCU- -5'
24092 3' -55.8 NC_005262.1 + 32687 0.74 0.28813
Target:  5'- cGCUGccgGCCGCCGGccucCAGGUgGGCGAc -3'
miRNA:   3'- -CGACua-UGGCGGCUc---GUCUAgCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 22489 0.74 0.28813
Target:  5'- cGCUGAagcUGgCGCgCGAGCGGAUC-GCGAa -3'
miRNA:   3'- -CGACU---AUgGCG-GCUCGUCUAGcCGCU- -5'
24092 3' -55.8 NC_005262.1 + 57307 0.74 0.295319
Target:  5'- --cGAgcGCCGCauCGAGCAGAUCGGCa- -3'
miRNA:   3'- cgaCUa-UGGCG--GCUCGUCUAGCCGcu -5'
24092 3' -55.8 NC_005262.1 + 36202 0.74 0.302647
Target:  5'- cCUGuucGCUGUCGAGCGGAUUGGCa- -3'
miRNA:   3'- cGACua-UGGCGGCUCGUCUAGCCGcu -5'
24092 3' -55.8 NC_005262.1 + 34764 0.73 0.333353
Target:  5'- uGCcGGcGCCGCuCGAGCucggcGGAUCGGUGAa -3'
miRNA:   3'- -CGaCUaUGGCG-GCUCG-----UCUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 50633 0.73 0.341378
Target:  5'- uGCUGGaaaugucGCCGCCGAGCAGcaacCGGCu- -3'
miRNA:   3'- -CGACUa------UGGCGGCUCGUCua--GCCGcu -5'
24092 3' -55.8 NC_005262.1 + 50510 0.73 0.349541
Target:  5'- uGCUGGaACCGCUGucaguGCAGAUCGGa-- -3'
miRNA:   3'- -CGACUaUGGCGGCu----CGUCUAGCCgcu -5'
24092 3' -55.8 NC_005262.1 + 50827 0.73 0.357843
Target:  5'- cGCgGucgucgaCGCCGAGCcGGUCGGCGAu -3'
miRNA:   3'- -CGaCuaug---GCGGCUCGuCUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 23675 0.73 0.357843
Target:  5'- --gGAUGCCGcCCGAGCGGcgCGuGUGGg -3'
miRNA:   3'- cgaCUAUGGC-GGCUCGUCuaGC-CGCU- -5'
24092 3' -55.8 NC_005262.1 + 40727 0.72 0.374857
Target:  5'- cGCUGAcGCCcUCGAGCAcGggCGGCGGc -3'
miRNA:   3'- -CGACUaUGGcGGCUCGU-CuaGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 47451 0.72 0.374857
Target:  5'- cGCcGAUcaGCgCGCCGAGcCAGAggaucgCGGCGAu -3'
miRNA:   3'- -CGaCUA--UG-GCGGCUC-GUCUa-----GCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 30159 0.72 0.39241
Target:  5'- gGCgGAUGCCgacgcgaaGCUGaAGgAGAUCGGCGAg -3'
miRNA:   3'- -CGaCUAUGG--------CGGC-UCgUCUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 38932 0.72 0.401385
Target:  5'- gGCgGAUGCacauCGCCGAGCAcuggcgcaggguGAUCGGCa- -3'
miRNA:   3'- -CGaCUAUG----GCGGCUCGU------------CUAGCCGcu -5'
24092 3' -55.8 NC_005262.1 + 58832 0.71 0.41972
Target:  5'- gGCUGcUGCgGCgcuuCGGcacGCAGAUCGGCGAc -3'
miRNA:   3'- -CGACuAUGgCG----GCU---CGUCUAGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.