miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24092 3' -55.8 NC_005262.1 + 233 0.66 0.742104
Target:  5'- cGCU---ACCGCCG-GCGG--CGGCGGg -3'
miRNA:   3'- -CGAcuaUGGCGGCuCGUCuaGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 450 0.66 0.742104
Target:  5'- cGCaUGAU-CCGCCuugaGGGCGuuGAccUCGGCGAc -3'
miRNA:   3'- -CG-ACUAuGGCGG----CUCGU--CU--AGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 2754 0.68 0.632426
Target:  5'- --cGAUcugGCUGCCGAagugguugcgguuaGCAGAcgucUCGGCGAg -3'
miRNA:   3'- cgaCUA---UGGCGGCU--------------CGUCU----AGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 3400 0.67 0.667016
Target:  5'- uGCgccAUGCCGCCGAcgaucuuGCGGc-CGGCGAc -3'
miRNA:   3'- -CGac-UAUGGCGGCU-------CGUCuaGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 3488 0.66 0.752334
Target:  5'- uGCgGAU-CgCGcCCGAcGCGGAUCGGCu- -3'
miRNA:   3'- -CGaCUAuG-GC-GGCU-CGUCUAGCCGcu -5'
24092 3' -55.8 NC_005262.1 + 5035 0.66 0.710813
Target:  5'- aGUUGcucGCCgGCCGGcGCcuGAUCGGCGGg -3'
miRNA:   3'- -CGACua-UGG-CGGCU-CGu-CUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 5146 0.7 0.477616
Target:  5'- cGCUGAUcCUGCuCGGcgcGCuGAUCGGUGAc -3'
miRNA:   3'- -CGACUAuGGCG-GCU---CGuCUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 5825 0.66 0.710813
Target:  5'- aCUGGcgguUugCGuaGAGCAGAUCGGgGu -3'
miRNA:   3'- cGACU----AugGCggCUCGUCUAGCCgCu -5'
24092 3' -55.8 NC_005262.1 + 6099 0.66 0.742104
Target:  5'- cGgUGAU-CCGCaCGuuGCGGAaCGGCGGc -3'
miRNA:   3'- -CgACUAuGGCG-GCu-CGUCUaGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 6585 0.75 0.274166
Target:  5'- cGC-GAUGCCGCCGAccgGCAGGUCcgGGuCGAg -3'
miRNA:   3'- -CGaCUAUGGCGGCU---CGUCUAG--CC-GCU- -5'
24092 3' -55.8 NC_005262.1 + 7613 0.71 0.438554
Target:  5'- --gGAUGCCGCauGGUAG-UCGGCGAu -3'
miRNA:   3'- cgaCUAUGGCGgcUCGUCuAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 8214 0.67 0.678848
Target:  5'- -aUGAU-CCGCgCGGGCcauGAgcugUCGGCGAa -3'
miRNA:   3'- cgACUAuGGCG-GCUCGu--CU----AGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 9352 0.69 0.560328
Target:  5'- cGCUGAUACUuCCGgucGGCGcGcgCGGCGGc -3'
miRNA:   3'- -CGACUAUGGcGGC---UCGU-CuaGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 9747 0.68 0.592443
Target:  5'- aGCgGAUA-CGUCGAGgAGAaauUCGGCGGc -3'
miRNA:   3'- -CGaCUAUgGCGGCUCgUCU---AGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 10122 0.8 0.120749
Target:  5'- gGCUGAUagauGCCcUCGGGCAGGUUGGCGAu -3'
miRNA:   3'- -CGACUA----UGGcGGCUCGUCUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 10225 0.68 0.603224
Target:  5'- uGCUGccggucagcgcGUGCgCGCCGAGCaccaucucGGGguacgCGGCGAa -3'
miRNA:   3'- -CGAC-----------UAUG-GCGGCUCG--------UCUa----GCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 10445 0.69 0.575265
Target:  5'- uGCaGAUGCUcggcaaGCCGGGCGGAagccgcgacgacagCGGCGAc -3'
miRNA:   3'- -CGaCUAUGG------CGGCUCGUCUa-------------GCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 10574 0.75 0.241633
Target:  5'- cGCaGcGUACCGCgGAGCAGcgCGGCGc -3'
miRNA:   3'- -CGaC-UAUGGCGgCUCGUCuaGCCGCu -5'
24092 3' -55.8 NC_005262.1 + 12383 0.67 0.68956
Target:  5'- cGCgcgcGCCGCCGAGCAcg-CGGUGc -3'
miRNA:   3'- -CGacuaUGGCGGCUCGUcuaGCCGCu -5'
24092 3' -55.8 NC_005262.1 + 14258 0.7 0.471645
Target:  5'- uGCUGGaGCgCGCucugcggcagcuccuCGAGCAGGcccUCGGCGAu -3'
miRNA:   3'- -CGACUaUG-GCG---------------GCUCGUCU---AGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.