Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24092 | 3' | -55.8 | NC_005262.1 | + | 57408 | 0.68 | 0.581695 |
Target: 5'- aGCUGA--CCGCCGAGaAGG-CGGCcGAc -3' miRNA: 3'- -CGACUauGGCGGCUCgUCUaGCCG-CU- -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 30159 | 0.72 | 0.39241 |
Target: 5'- gGCgGAUGCCgacgcgaaGCUGaAGgAGAUCGGCGAg -3' miRNA: 3'- -CGaCUAUGG--------CGGC-UCgUCUAGCCGCU- -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 54631 | 0.71 | 0.41972 |
Target: 5'- -gUGGU-CCGCCGAGCAGucCGGCu- -3' miRNA: 3'- cgACUAuGGCGGCUCGUCuaGCCGcu -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 58832 | 0.71 | 0.41972 |
Target: 5'- gGCUGcUGCgGCgcuuCGGcacGCAGAUCGGCGAc -3' miRNA: 3'- -CGACuAUGgCG----GCU---CGUCUAGCCGCU- -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 51297 | 0.7 | 0.467685 |
Target: 5'- uGCUGcgcAUGCCGCuCGAcCAGAUgGGCGc -3' miRNA: 3'- -CGAC---UAUGGCG-GCUcGUCUAgCCGCu -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 53135 | 0.7 | 0.467685 |
Target: 5'- cGC-GAUGCCGCgCGAGUucuucGAcgCGGCGAu -3' miRNA: 3'- -CGaCUAUGGCG-GCUCGu----CUa-GCCGCU- -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 5146 | 0.7 | 0.477616 |
Target: 5'- cGCUGAUcCUGCuCGGcgcGCuGAUCGGUGAc -3' miRNA: 3'- -CGACUAuGGCG-GCU---CGuCUAGCCGCU- -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 24724 | 0.69 | 0.528714 |
Target: 5'- aGCUGAUcgcGCUGgCGcGCGcGAUCGGCGu -3' miRNA: 3'- -CGACUA---UGGCgGCuCGU-CUAGCCGCu -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 10445 | 0.69 | 0.575265 |
Target: 5'- uGCaGAUGCUcggcaaGCCGGGCGGAagccgcgacgacagCGGCGAc -3' miRNA: 3'- -CGaCUAUGG------CGGCUCGUCUa-------------GCCGCU- -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 40727 | 0.72 | 0.374857 |
Target: 5'- cGCUGAcGCCcUCGAGCAcGggCGGCGGc -3' miRNA: 3'- -CGACUaUGGcGGCUCGU-CuaGCCGCU- -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 23675 | 0.73 | 0.357843 |
Target: 5'- --gGAUGCCGcCCGAGCGGcgCGuGUGGg -3' miRNA: 3'- cgaCUAUGGC-GGCUCGUCuaGC-CGCU- -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 50510 | 0.73 | 0.349541 |
Target: 5'- uGCUGGaACCGCUGucaguGCAGAUCGGa-- -3' miRNA: 3'- -CGACUaUGGCGGCu----CGUCUAGCCgcu -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 14319 | 0.79 | 0.138504 |
Target: 5'- gGCgGA-ACCGCCGAGCuGggCGGCGAa -3' miRNA: 3'- -CGaCUaUGGCGGCUCGuCuaGCCGCU- -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 45840 | 0.76 | 0.212382 |
Target: 5'- cGCUGAUgauGCCGaugcaCGAGCAGAUgaaGGCGGa -3' miRNA: 3'- -CGACUA---UGGCg----GCUCGUCUAg--CCGCU- -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 10574 | 0.75 | 0.241633 |
Target: 5'- cGCaGcGUACCGCgGAGCAGcgCGGCGc -3' miRNA: 3'- -CGaC-UAUGGCGgCUCGUCuaGCCGCu -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 22489 | 0.74 | 0.28813 |
Target: 5'- cGCUGAagcUGgCGCgCGAGCGGAUC-GCGAa -3' miRNA: 3'- -CGACU---AUgGCG-GCUCGUCUAGcCGCU- -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 32687 | 0.74 | 0.28813 |
Target: 5'- cGCUGccgGCCGCCGGccucCAGGUgGGCGAc -3' miRNA: 3'- -CGACua-UGGCGGCUc---GUCUAgCCGCU- -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 57307 | 0.74 | 0.295319 |
Target: 5'- --cGAgcGCCGCauCGAGCAGAUCGGCa- -3' miRNA: 3'- cgaCUa-UGGCG--GCUCGUCUAGCCGcu -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 34764 | 0.73 | 0.333353 |
Target: 5'- uGCcGGcGCCGCuCGAGCucggcGGAUCGGUGAa -3' miRNA: 3'- -CGaCUaUGGCG-GCUCG-----UCUAGCCGCU- -5' |
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24092 | 3' | -55.8 | NC_005262.1 | + | 50633 | 0.73 | 0.341378 |
Target: 5'- uGCUGGaaaugucGCCGCCGAGCAGcaacCGGCu- -3' miRNA: 3'- -CGACUa------UGGCGGCUCGUCua--GCCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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