Results 21 - 40 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 23344 | 0.69 | 0.263712 |
Target: 5'- gCGCUCGACCaCGG-CCggcgugaagcGCgCGG-CGGCg -3' miRNA: 3'- -GCGAGCUGG-GCCuGGa---------CG-GCCaGCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 22217 | 0.69 | 0.270051 |
Target: 5'- gCGCUCGACaagcucaCGGccgcGCCgcccacGCCGGcCGGCc -3' miRNA: 3'- -GCGAGCUGg------GCC----UGGa-----CGGCCaGCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 49841 | 0.69 | 0.276512 |
Target: 5'- gCGCgaaUGGCCCGG---UGCCGG-CGGCg -3' miRNA: 3'- -GCGa--GCUGGGCCuggACGGCCaGCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 48576 | 0.69 | 0.276512 |
Target: 5'- uGCUCGACCCGaacgaaGCgaGCCGccUCGGCc -3' miRNA: 3'- gCGAGCUGGGCc-----UGgaCGGCc-AGCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 60976 | 0.69 | 0.276512 |
Target: 5'- uCGCUCGAUgCGuuCCUGUCGGcCGuGCc -3' miRNA: 3'- -GCGAGCUGgGCcuGGACGGCCaGC-CG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 16039 | 0.69 | 0.276512 |
Target: 5'- cCGCgCGAUgCCGGguucGCCgcgGCCGG-CGGCg -3' miRNA: 3'- -GCGaGCUG-GGCC----UGGa--CGGCCaGCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 17063 | 0.69 | 0.283096 |
Target: 5'- gGCgaUCGAUCCGGuCgUGCCGGauugcgcCGGCu -3' miRNA: 3'- gCG--AGCUGGGCCuGgACGGCCa------GCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 27338 | 0.69 | 0.295259 |
Target: 5'- uGCUCGaccucaucaagauGCCCGagaacccGACCgagGCCGucGUCGGCg -3' miRNA: 3'- gCGAGC-------------UGGGC-------CUGGa--CGGC--CAGCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 11124 | 0.69 | 0.296635 |
Target: 5'- uGCaaCGACCCGGACUU-CUGGgcgUGGCu -3' miRNA: 3'- gCGa-GCUGGGCCUGGAcGGCCa--GCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 2787 | 0.69 | 0.296635 |
Target: 5'- aCGuCUCGGCgaGcGGCUUGaugaCGGUCGGCa -3' miRNA: 3'- -GC-GAGCUGggC-CUGGACg---GCCAGCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 45229 | 0.68 | 0.303591 |
Target: 5'- gGCUCGGCCUGaAC--GCCGGcaacUCGGCg -3' miRNA: 3'- gCGAGCUGGGCcUGgaCGGCC----AGCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 51203 | 0.68 | 0.303591 |
Target: 5'- gCGCUC-AUCCGcGacGCCUcGCCGG-CGGCa -3' miRNA: 3'- -GCGAGcUGGGC-C--UGGA-CGGCCaGCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 34622 | 0.68 | 0.317877 |
Target: 5'- aGCUCGGCgaCGGccGCCUGacgcaUGGUCGcGCg -3' miRNA: 3'- gCGAGCUGg-GCC--UGGACg----GCCAGC-CG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 53239 | 0.68 | 0.317877 |
Target: 5'- aCGCUgCGGCUgcgCGcGGCCgGUCGcGUCGGCa -3' miRNA: 3'- -GCGA-GCUGG---GC-CUGGaCGGC-CAGCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 12312 | 0.68 | 0.317877 |
Target: 5'- cCGCUCGAUCUcguaGGACUgGCCGcccUUGGCg -3' miRNA: 3'- -GCGAGCUGGG----CCUGGaCGGCc--AGCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 5095 | 0.68 | 0.317877 |
Target: 5'- gGCUCGgcggugcgcGCCCGGuucacgauGCCUGCCaugcgcgacGGgCGGCg -3' miRNA: 3'- gCGAGC---------UGGGCC--------UGGACGG---------CCaGCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 19012 | 0.68 | 0.317877 |
Target: 5'- aGCUCGucgaGCUCGG-CCUGCCGcGcgcUGGCg -3' miRNA: 3'- gCGAGC----UGGGCCuGGACGGC-Ca--GCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 15742 | 0.68 | 0.324469 |
Target: 5'- uCGCUgaGAacuUCUGGAcgaagcaCCUGCCGGcCGGCg -3' miRNA: 3'- -GCGAg-CU---GGGCCU-------GGACGGCCaGCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 33150 | 0.68 | 0.332663 |
Target: 5'- cCGCguugucCGACgCGGGCaccuUGCCGagcGUCGGCg -3' miRNA: 3'- -GCGa-----GCUGgGCCUGg---ACGGC---CAGCCG- -5' |
|||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 4885 | 0.68 | 0.332663 |
Target: 5'- gCGC-CGACUC-GACCUGCU--UCGGCg -3' miRNA: 3'- -GCGaGCUGGGcCUGGACGGccAGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home