miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24095 3' -56.6 NC_005262.1 + 41281 0.66 0.713545
Target:  5'- gAUUCGgccgcGCGUGGGcgacaucaagguauGGCGCG-GCGCGa -3'
miRNA:   3'- gUAAGU-----UGCACCUc-------------CCGCGCuCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 37713 0.66 0.709338
Target:  5'- ---aCGGCGUGcagauGGGGCGUGAagggcuGCGCGu -3'
miRNA:   3'- guaaGUUGCACc----UCCCGCGCU------CGCGC- -5'
24095 3' -56.6 NC_005262.1 + 22365 0.66 0.709338
Target:  5'- ---gCGugGUgcGGAGGGUGuCcGGCGCGg -3'
miRNA:   3'- guaaGUugCA--CCUCCCGC-GcUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 35825 0.66 0.698772
Target:  5'- --aUCAugGgccGGAGcGGCGUcGGCGCc -3'
miRNA:   3'- guaAGUugCa--CCUC-CCGCGcUCGCGc -5'
24095 3' -56.6 NC_005262.1 + 3814 0.66 0.688143
Target:  5'- --cUCGACGgcccGGAGgaaGGUGcCGAGCGCc -3'
miRNA:   3'- guaAGUUGCa---CCUC---CCGC-GCUCGCGc -5'
24095 3' -56.6 NC_005262.1 + 4583 0.66 0.688143
Target:  5'- ---gCGGCGcUGcucGGGCGUGAGCGCc -3'
miRNA:   3'- guaaGUUGC-ACcu-CCCGCGCUCGCGc -5'
24095 3' -56.6 NC_005262.1 + 60848 0.67 0.645214
Target:  5'- --aUCGGCGUGGcgauggccgAGGcaaugcGCGCGAaaGCGCGa -3'
miRNA:   3'- guaAGUUGCACC---------UCC------CGCGCU--CGCGC- -5'
24095 3' -56.6 NC_005262.1 + 51947 0.67 0.645214
Target:  5'- ---aCAAgGUGGAGGcCGCucGCGCGc -3'
miRNA:   3'- guaaGUUgCACCUCCcGCGcuCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 13447 0.67 0.645214
Target:  5'- --gUCcGCGUGaAGGGuCGCaaGGGCGCGa -3'
miRNA:   3'- guaAGuUGCACcUCCC-GCG--CUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 36160 0.67 0.634428
Target:  5'- --cUUGACGguaguaGGAGaggaGGCGCGAGUGCa -3'
miRNA:   3'- guaAGUUGCa-----CCUC----CCGCGCUCGCGc -5'
24095 3' -56.6 NC_005262.1 + 52447 0.67 0.634428
Target:  5'- --gUCGACGUGccGcGCGCGAGCgGCGu -3'
miRNA:   3'- guaAGUUGCACcuCcCGCGCUCG-CGC- -5'
24095 3' -56.6 NC_005262.1 + 13515 0.67 0.634428
Target:  5'- gCcgUC-ACGggcucGGccGGCGCGGGCGCGc -3'
miRNA:   3'- -GuaAGuUGCa----CCucCCGCGCUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 17089 0.67 0.634428
Target:  5'- cCcgUCGACGcGGcGGGcCGCGAggagguccaccGCGCGg -3'
miRNA:   3'- -GuaAGUUGCaCCuCCC-GCGCU-----------CGCGC- -5'
24095 3' -56.6 NC_005262.1 + 17298 0.67 0.627956
Target:  5'- gGUUCGGCaGgagaaGGAggaagcagaccgcaaGGaGCGCGAGCGCGu -3'
miRNA:   3'- gUAAGUUG-Ca----CCU---------------CC-CGCGCUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 15464 0.67 0.622563
Target:  5'- --aUCGAUGUGcGAGaagcacGGCGCuuacaccGAGCGCGg -3'
miRNA:   3'- guaAGUUGCAC-CUC------CCGCG-------CUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 41150 0.67 0.612861
Target:  5'- aCGUUCAcCGUgcagcgcgcgcaGGAGGGCaccgccgcgaucGCGuGCGCGc -3'
miRNA:   3'- -GUAAGUuGCA------------CCUCCCG------------CGCuCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 36309 0.67 0.612861
Target:  5'- --gUCGACuucgGUGGGGGGC-CGGuGCGCu -3'
miRNA:   3'- guaAGUUG----CACCUCCCGcGCU-CGCGc -5'
24095 3' -56.6 NC_005262.1 + 56739 0.67 0.612861
Target:  5'- gCGUUCGacauggccgccGCGcUGGcgucGGGCGaCGAGCGCu -3'
miRNA:   3'- -GUAAGU-----------UGC-ACCu---CCCGC-GCUCGCGc -5'
24095 3' -56.6 NC_005262.1 + 53048 0.68 0.563609
Target:  5'- ----gGGCGUGGAGuacgacgcgcugaccGGCGCGAuCGCGa -3'
miRNA:   3'- guaagUUGCACCUC---------------CCGCGCUcGCGC- -5'
24095 3' -56.6 NC_005262.1 + 49200 0.68 0.559368
Target:  5'- uCGUUUugUGUGGuguuguuGGGUGCGGuGCGCGu -3'
miRNA:   3'- -GUAAGuuGCACCu------CCCGCGCU-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.