miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24095 5' -56.5 NC_005262.1 + 7546 0.66 0.69292
Target:  5'- cGGCGCGCUCGaCGacaUCCUucccgugcagcgucACGGAGc- -3'
miRNA:   3'- -CCGCGCGGGC-GUag-AGGA--------------UGCCUUuu -5'
24095 5' -56.5 NC_005262.1 + 18302 0.66 0.685395
Target:  5'- aGGCGCGCCgGUucgCUUC-GCGGcGAAu -3'
miRNA:   3'- -CCGCGCGGgCGua-GAGGaUGCCuUUU- -5'
24095 5' -56.5 NC_005262.1 + 57569 0.66 0.685395
Target:  5'- cGGCGgGCUucaGCAUCUCg-GCGGGc-- -3'
miRNA:   3'- -CCGCgCGGg--CGUAGAGgaUGCCUuuu -5'
24095 5' -56.5 NC_005262.1 + 43214 0.66 0.685395
Target:  5'- cGGCGCGCCgCGCG-CUgCUcgcCGGGc-- -3'
miRNA:   3'- -CCGCGCGG-GCGUaGAgGAu--GCCUuuu -5'
24095 5' -56.5 NC_005262.1 + 5105 0.66 0.685395
Target:  5'- uGCGCGCCCGguUCacgaugCCUgccaugcgcgACGGGc-- -3'
miRNA:   3'- cCGCGCGGGCguAGa-----GGA----------UGCCUuuu -5'
24095 5' -56.5 NC_005262.1 + 15406 0.66 0.685395
Target:  5'- uGCGCGCugCUGCugAUCUUCUggGCGGggGGa -3'
miRNA:   3'- cCGCGCG--GGCG--UAGAGGA--UGCCuuUU- -5'
24095 5' -56.5 NC_005262.1 + 1489 0.66 0.663774
Target:  5'- cGGCGCuGCCgcUGCAUCU---GCGGAGGGa -3'
miRNA:   3'- -CCGCG-CGG--GCGUAGAggaUGCCUUUU- -5'
24095 5' -56.5 NC_005262.1 + 49158 0.66 0.663774
Target:  5'- gGGCGUGCaggCCGCAUCggCCgcaGCGGc--- -3'
miRNA:   3'- -CCGCGCG---GGCGUAGa-GGa--UGCCuuuu -5'
24095 5' -56.5 NC_005262.1 + 51148 0.66 0.652915
Target:  5'- cGCGCGCCgCGCGcgcuUCUUCUucACGGu--- -3'
miRNA:   3'- cCGCGCGG-GCGU----AGAGGA--UGCCuuuu -5'
24095 5' -56.5 NC_005262.1 + 5592 0.66 0.652915
Target:  5'- gGGCG-GCgCCGC-UCUCCgcaggcgacGCGGAAAc -3'
miRNA:   3'- -CCGCgCG-GGCGuAGAGGa--------UGCCUUUu -5'
24095 5' -56.5 NC_005262.1 + 22152 0.66 0.652915
Target:  5'- cGGC-UGCCCGCAUCgCCgagcUGGAGGc -3'
miRNA:   3'- -CCGcGCGGGCGUAGaGGau--GCCUUUu -5'
24095 5' -56.5 NC_005262.1 + 51056 0.66 0.652915
Target:  5'- aGGCGCaGCCacugaccgaugaCGCGgugCUCCgGCGGGAc- -3'
miRNA:   3'- -CCGCG-CGG------------GCGUa--GAGGaUGCCUUuu -5'
24095 5' -56.5 NC_005262.1 + 31041 0.66 0.642037
Target:  5'- cGGCGaucaGCaCCGCGUCgCUcACGGAGu- -3'
miRNA:   3'- -CCGCg---CG-GGCGUAGaGGaUGCCUUuu -5'
24095 5' -56.5 NC_005262.1 + 2189 0.66 0.642037
Target:  5'- aGGCGCGCgCGCuUCUgCU-CGGucGAg -3'
miRNA:   3'- -CCGCGCGgGCGuAGAgGAuGCCuuUU- -5'
24095 5' -56.5 NC_005262.1 + 46475 0.67 0.620264
Target:  5'- -aCGCGCUCGCG-CUCCUuGCGGu--- -3'
miRNA:   3'- ccGCGCGGGCGUaGAGGA-UGCCuuuu -5'
24095 5' -56.5 NC_005262.1 + 45294 0.67 0.620264
Target:  5'- uGCGCGCUCGg--CUUCUguACGGAAAGc -3'
miRNA:   3'- cCGCGCGGGCguaGAGGA--UGCCUUUU- -5'
24095 5' -56.5 NC_005262.1 + 1997 0.67 0.620264
Target:  5'- uGGUGUGCUCGCAUgCUCCacgccACGGc--- -3'
miRNA:   3'- -CCGCGCGGGCGUA-GAGGa----UGCCuuuu -5'
24095 5' -56.5 NC_005262.1 + 8997 0.67 0.609388
Target:  5'- cGC-CGCgCGCAUCUUCUGCGcGAc-- -3'
miRNA:   3'- cCGcGCGgGCGUAGAGGAUGC-CUuuu -5'
24095 5' -56.5 NC_005262.1 + 30150 0.67 0.598532
Target:  5'- aGGCGCGCUCGuCAg--CCU-CGGAc-- -3'
miRNA:   3'- -CCGCGCGGGC-GUagaGGAuGCCUuuu -5'
24095 5' -56.5 NC_005262.1 + 12922 0.67 0.597448
Target:  5'- aGCGCGCCgugcgauUGCGUCggcaCCUGCGGc--- -3'
miRNA:   3'- cCGCGCGG-------GCGUAGa---GGAUGCCuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.