Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24097 | 3' | -61.2 | NC_005262.1 | + | 58629 | 1.09 | 0.000356 |
Target: 5'- cCGUCAGGCUCGGCAGUCGAGCGGCCGg -3' miRNA: 3'- -GCAGUCCGAGCCGUCAGCUCGCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 30857 | 0.74 | 0.149972 |
Target: 5'- aCGUCGGGaugaCGGCcgaggAGUcgcCGAGCGGCCGg -3' miRNA: 3'- -GCAGUCCga--GCCG-----UCA---GCUCGCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 13516 | 0.74 | 0.149972 |
Target: 5'- cCGUCacGGGCUCGGCcGgcgCGGGCGcGCCc -3' miRNA: 3'- -GCAG--UCCGAGCCGuCa--GCUCGC-CGGc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 10446 | 0.72 | 0.183942 |
Target: 5'- cCGaUCAGGUUCGcGCGGUCGgcgagguAGCGGCgCGc -3' miRNA: 3'- -GC-AGUCCGAGC-CGUCAGC-------UCGCCG-GC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 39783 | 0.72 | 0.184412 |
Target: 5'- uGUaCAGGCUCGGCacGGUUGcuUGGCCGu -3' miRNA: 3'- gCA-GUCCGAGCCG--UCAGCucGCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 56277 | 0.72 | 0.204131 |
Target: 5'- -aUCGGGCUCGGCgagcAGUCGGcgaagaaccGCGGCUu -3' miRNA: 3'- gcAGUCCGAGCCG----UCAGCU---------CGCCGGc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 13711 | 0.71 | 0.237118 |
Target: 5'- gCGgcgCGGGUUCGGuCGG-CGcAGCGGCCu -3' miRNA: 3'- -GCa--GUCCGAGCC-GUCaGC-UCGCCGGc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 29132 | 0.7 | 0.255226 |
Target: 5'- aGUCGGGauagCGGUcgucgagccAGUCGAGCGacGCCGg -3' miRNA: 3'- gCAGUCCga--GCCG---------UCAGCUCGC--CGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 251 | 0.7 | 0.264058 |
Target: 5'- uCGUCAGGCUCGGuCGuucauccgucaccucGUCucGCGGCUc -3' miRNA: 3'- -GCAGUCCGAGCC-GU---------------CAGcuCGCCGGc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 62320 | 0.7 | 0.267918 |
Target: 5'- gCGgCAGcGC-CGGCAGaCGAGCGGgCGg -3' miRNA: 3'- -GCaGUC-CGaGCCGUCaGCUCGCCgGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 29642 | 0.7 | 0.281116 |
Target: 5'- ----cGGCaUCGGCAG-CGAGCGGCa- -3' miRNA: 3'- gcaguCCG-AGCCGUCaGCUCGCCGgc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 13470 | 0.69 | 0.30187 |
Target: 5'- uCGUCcuGCgCGGCGGgCGcuGCGGCCGg -3' miRNA: 3'- -GCAGucCGaGCCGUCaGCu-CGCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 25662 | 0.69 | 0.309046 |
Target: 5'- aGUCGGGCauUCuGGUcaucgAGUCGA-CGGCCGa -3' miRNA: 3'- gCAGUCCG--AG-CCG-----UCAGCUcGCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 17239 | 0.69 | 0.316352 |
Target: 5'- uCGUCguGGGCgucgCGGgAG-CG-GCGGCCGg -3' miRNA: 3'- -GCAG--UCCGa---GCCgUCaGCuCGCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 24976 | 0.69 | 0.323787 |
Target: 5'- --aCAGGC-CGGCuuGGUCGAgGCGGCa- -3' miRNA: 3'- gcaGUCCGaGCCG--UCAGCU-CGCCGgc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 59963 | 0.68 | 0.344506 |
Target: 5'- aCGUCacgcgcggGGcGCUCGGCAccuuccuccgggccGUCGAGgaUGGCCGg -3' miRNA: 3'- -GCAG--------UC-CGAGCCGU--------------CAGCUC--GCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 52359 | 0.68 | 0.346867 |
Target: 5'- gCG-CGGGCgCGGCGuGUCGcgcaccuucGGCGGCCc -3' miRNA: 3'- -GCaGUCCGaGCCGU-CAGC---------UCGCCGGc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 46408 | 0.68 | 0.354817 |
Target: 5'- uCGUCGGGCUgGGCccgcaaGGUCcGcAGgGGCCc -3' miRNA: 3'- -GCAGUCCGAgCCG------UCAG-C-UCgCCGGc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 33094 | 0.68 | 0.3711 |
Target: 5'- -uUCGGGgUCcguuuccuggaGGCGGUCGAGC-GCCGu -3' miRNA: 3'- gcAGUCCgAG-----------CCGUCAGCUCGcCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 58949 | 0.68 | 0.374418 |
Target: 5'- gGUCGGcGCgCaGCAGUCGAaccagccggccgccgGCGGCCu -3' miRNA: 3'- gCAGUC-CGaGcCGUCAGCU---------------CGCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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