miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24097 3' -61.2 NC_005262.1 + 58629 1.09 0.000356
Target:  5'- cCGUCAGGCUCGGCAGUCGAGCGGCCGg -3'
miRNA:   3'- -GCAGUCCGAGCCGUCAGCUCGCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 19108 0.66 0.478838
Target:  5'- cCGUCAccaacGGCUUGucGCGGUCGGGCaGCa- -3'
miRNA:   3'- -GCAGU-----CCGAGC--CGUCAGCUCGcCGgc -5'
24097 3' -61.2 NC_005262.1 + 7524 0.66 0.478838
Target:  5'- uCGggCAGGUUCGGCGGcgCGucGGCGcGCuCGa -3'
miRNA:   3'- -GCa-GUCCGAGCCGUCa-GC--UCGC-CG-GC- -5'
24097 3' -61.2 NC_005262.1 + 35595 0.66 0.466404
Target:  5'- uCGgcgCGGGCUCGGCacagauggcguugcAGUCGucCGGCa- -3'
miRNA:   3'- -GCa--GUCCGAGCCG--------------UCAGCucGCCGgc -5'
24097 3' -61.2 NC_005262.1 + 63294 0.66 0.459779
Target:  5'- cCGgcugCuGGCUCGGC-GUCGAcguggaacacGCGcGCCGc -3'
miRNA:   3'- -GCa---GuCCGAGCCGuCAGCU----------CGC-CGGC- -5'
24097 3' -61.2 NC_005262.1 + 21335 0.66 0.450401
Target:  5'- aCGUcCAGGa--GGCGaUCGAgGCGGCCa -3'
miRNA:   3'- -GCA-GUCCgagCCGUcAGCU-CGCCGGc -5'
24097 3' -61.2 NC_005262.1 + 5294 0.66 0.449469
Target:  5'- gGUCGaucacgcGGUcgaGGCGGUCgGAGCuGGCCGg -3'
miRNA:   3'- gCAGU-------CCGag-CCGUCAG-CUCG-CCGGC- -5'
24097 3' -61.2 NC_005262.1 + 6549 0.67 0.422917
Target:  5'- --aCGGGCuUCGGCGuGUugccgccgaCGAGCGGCgCGa -3'
miRNA:   3'- gcaGUCCG-AGCCGU-CA---------GCUCGCCG-GC- -5'
24097 3' -61.2 NC_005262.1 + 12254 0.67 0.405163
Target:  5'- gCGUCGauGGUcgGGCAccuGUCGAucGCGGCCGg -3'
miRNA:   3'- -GCAGU--CCGagCCGU---CAGCU--CGCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 58949 0.68 0.374418
Target:  5'- gGUCGGcGCgCaGCAGUCGAaccagccggccgccgGCGGCCu -3'
miRNA:   3'- gCAGUC-CGaGcCGUCAGCU---------------CGCCGGc -5'
24097 3' -61.2 NC_005262.1 + 30857 0.74 0.149972
Target:  5'- aCGUCGGGaugaCGGCcgaggAGUcgcCGAGCGGCCGg -3'
miRNA:   3'- -GCAGUCCga--GCCG-----UCA---GCUCGCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 56277 0.72 0.204131
Target:  5'- -aUCGGGCUCGGCgagcAGUCGGcgaagaaccGCGGCUu -3'
miRNA:   3'- gcAGUCCGAGCCG----UCAGCU---------CGCCGGc -5'
24097 3' -61.2 NC_005262.1 + 251 0.7 0.264058
Target:  5'- uCGUCAGGCUCGGuCGuucauccgucaccucGUCucGCGGCUc -3'
miRNA:   3'- -GCAGUCCGAGCC-GU---------------CAGcuCGCCGGc -5'
24097 3' -61.2 NC_005262.1 + 29642 0.7 0.281116
Target:  5'- ----cGGCaUCGGCAG-CGAGCGGCa- -3'
miRNA:   3'- gcaguCCG-AGCCGUCaGCUCGCCGgc -5'
24097 3' -61.2 NC_005262.1 + 25662 0.69 0.309046
Target:  5'- aGUCGGGCauUCuGGUcaucgAGUCGA-CGGCCGa -3'
miRNA:   3'- gCAGUCCG--AG-CCG-----UCAGCUcGCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 24976 0.69 0.323787
Target:  5'- --aCAGGC-CGGCuuGGUCGAgGCGGCa- -3'
miRNA:   3'- gcaGUCCGaGCCG--UCAGCU-CGCCGgc -5'
24097 3' -61.2 NC_005262.1 + 46408 0.68 0.354817
Target:  5'- uCGUCGGGCUgGGCccgcaaGGUCcGcAGgGGCCc -3'
miRNA:   3'- -GCAGUCCGAgCCG------UCAG-C-UCgCCGGc -5'
24097 3' -61.2 NC_005262.1 + 13516 0.74 0.149972
Target:  5'- cCGUCacGGGCUCGGCcGgcgCGGGCGcGCCc -3'
miRNA:   3'- -GCAG--UCCGAGCCGuCa--GCUCGC-CGGc -5'
24097 3' -61.2 NC_005262.1 + 2787 0.66 0.478838
Target:  5'- aCGUCucGGCgagCGGCuugaugacGGUCGGcaCGGCCGa -3'
miRNA:   3'- -GCAGu-CCGa--GCCG--------UCAGCUc-GCCGGC- -5'
24097 3' -61.2 NC_005262.1 + 29739 0.66 0.459779
Target:  5'- aGUcCGGGUUCuGGUcGUCGAGCaacuGCCGa -3'
miRNA:   3'- gCA-GUCCGAG-CCGuCAGCUCGc---CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.