Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24097 | 3' | -61.2 | NC_005262.1 | + | 251 | 0.7 | 0.264058 |
Target: 5'- uCGUCAGGCUCGGuCGuucauccgucaccucGUCucGCGGCUc -3' miRNA: 3'- -GCAGUCCGAGCC-GU---------------CAGcuCGCCGGc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 2787 | 0.66 | 0.478838 |
Target: 5'- aCGUCucGGCgagCGGCuugaugacGGUCGGcaCGGCCGa -3' miRNA: 3'- -GCAGu-CCGa--GCCG--------UCAGCUc-GCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 5294 | 0.66 | 0.449469 |
Target: 5'- gGUCGaucacgcGGUcgaGGCGGUCgGAGCuGGCCGg -3' miRNA: 3'- gCAGU-------CCGag-CCGUCAG-CUCG-CCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 6549 | 0.67 | 0.422917 |
Target: 5'- --aCGGGCuUCGGCGuGUugccgccgaCGAGCGGCgCGa -3' miRNA: 3'- gcaGUCCG-AGCCGU-CA---------GCUCGCCG-GC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 7524 | 0.66 | 0.478838 |
Target: 5'- uCGggCAGGUUCGGCGGcgCGucGGCGcGCuCGa -3' miRNA: 3'- -GCa-GUCCGAGCCGUCa-GC--UCGC-CG-GC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 8886 | 0.67 | 0.396464 |
Target: 5'- gCGUCAGGUgCGaGCcGUCGAacuggcGCGGCgCGa -3' miRNA: 3'- -GCAGUCCGaGC-CGuCAGCU------CGCCG-GC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 10446 | 0.72 | 0.183942 |
Target: 5'- cCGaUCAGGUUCGcGCGGUCGgcgagguAGCGGCgCGc -3' miRNA: 3'- -GC-AGUCCGAGC-CGUCAGC-------UCGCCG-GC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 12254 | 0.67 | 0.405163 |
Target: 5'- gCGUCGauGGUcgGGCAccuGUCGAucGCGGCCGg -3' miRNA: 3'- -GCAGU--CCGagCCGU---CAGCU--CGCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 13470 | 0.69 | 0.30187 |
Target: 5'- uCGUCcuGCgCGGCGGgCGcuGCGGCCGg -3' miRNA: 3'- -GCAGucCGaGCCGUCaGCu-CGCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 13516 | 0.74 | 0.149972 |
Target: 5'- cCGUCacGGGCUCGGCcGgcgCGGGCGcGCCc -3' miRNA: 3'- -GCAG--UCCGAGCCGuCa--GCUCGC-CGGc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 13661 | 0.66 | 0.431967 |
Target: 5'- -cUCAGGCucgcuccacUCGGuCAG-CGAGCgcucGGCCGg -3' miRNA: 3'- gcAGUCCG---------AGCC-GUCaGCUCG----CCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 13711 | 0.71 | 0.237118 |
Target: 5'- gCGgcgCGGGUUCGGuCGG-CGcAGCGGCCu -3' miRNA: 3'- -GCa--GUCCGAGCC-GUCaGC-UCGCCGGc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 14018 | 0.67 | 0.413981 |
Target: 5'- gCGUCcGGCgCGGCAGcggccggagccUCGGGCGcgggcgccGCCGg -3' miRNA: 3'- -GCAGuCCGaGCCGUC-----------AGCUCGC--------CGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 17239 | 0.69 | 0.316352 |
Target: 5'- uCGUCguGGGCgucgCGGgAG-CG-GCGGCCGg -3' miRNA: 3'- -GCAG--UCCGa---GCCgUCaGCuCGCCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 17352 | 0.66 | 0.441129 |
Target: 5'- -uUCGGGUcCGGCg--CGGGCGGCgCGg -3' miRNA: 3'- gcAGUCCGaGCCGucaGCUCGCCG-GC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 19108 | 0.66 | 0.478838 |
Target: 5'- cCGUCAccaacGGCUUGucGCGGUCGGGCaGCa- -3' miRNA: 3'- -GCAGU-----CCGAGC--CGUCAGCUCGcCGgc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 21177 | 0.66 | 0.488513 |
Target: 5'- -aUCAugccGUUCGGCAG-CGAGauaaGGCCGg -3' miRNA: 3'- gcAGUc---CGAGCCGUCaGCUCg---CCGGC- -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 21335 | 0.66 | 0.450401 |
Target: 5'- aCGUcCAGGa--GGCGaUCGAgGCGGCCa -3' miRNA: 3'- -GCA-GUCCgagCCGUcAGCU-CGCCGGc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 24976 | 0.69 | 0.323787 |
Target: 5'- --aCAGGC-CGGCuuGGUCGAgGCGGCa- -3' miRNA: 3'- gcaGUCCGaGCCG--UCAGCU-CGCCGgc -5' |
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24097 | 3' | -61.2 | NC_005262.1 | + | 25662 | 0.69 | 0.309046 |
Target: 5'- aGUCGGGCauUCuGGUcaucgAGUCGA-CGGCCGa -3' miRNA: 3'- gCAGUCCG--AG-CCG-----UCAGCUcGCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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