Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24098 | 3' | -62.9 | NC_005262.1 | + | 19175 | 0.68 | 0.26151 |
Target: 5'- -cCAUGCCUUgCGCGCgGgcuucUCGCGCUc -3' miRNA: 3'- gaGUGCGGAGgGCGCGgC-----AGCGCGAa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 35215 | 0.68 | 0.267918 |
Target: 5'- aUCACGCCguaggGCauGCCGUCGCGCg- -3' miRNA: 3'- gAGUGCGGaggg-CG--CGGCAGCGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 50834 | 0.68 | 0.273794 |
Target: 5'- gUCgACGCCgagCCgGUcggcgauGCCGUCGCGCa- -3' miRNA: 3'- gAG-UGCGGa--GGgCG-------CGGCAGCGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 19939 | 0.68 | 0.274453 |
Target: 5'- aUCGCGCCgaggUCCUGCcggccaccGCCG-CGCGCg- -3' miRNA: 3'- gAGUGCGG----AGGGCG--------CGGCaGCGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 46230 | 0.68 | 0.274453 |
Target: 5'- cCUCG-GCUUCgCGCGCCGcCGCgGCUg -3' miRNA: 3'- -GAGUgCGGAGgGCGCGGCaGCG-CGAa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 34149 | 0.68 | 0.287905 |
Target: 5'- -cUACGUCUaCCCGCcgGCCGUCGCcgGCa- -3' miRNA: 3'- gaGUGCGGA-GGGCG--CGGCAGCG--CGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 8771 | 0.68 | 0.287905 |
Target: 5'- --aACGUCUugCCCGCGCCGaccgCGUGCg- -3' miRNA: 3'- gagUGCGGA--GGGCGCGGCa---GCGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 28807 | 0.67 | 0.294823 |
Target: 5'- cCUCGCGCCcgcgcaUCUCGaGCucgCGUCGCGCUc -3' miRNA: 3'- -GAGUGCGG------AGGGCgCG---GCAGCGCGAa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 58654 | 0.67 | 0.300451 |
Target: 5'- -gCGCGCCgagcaggaucagCgCCGC-CCGUCGCGCa- -3' miRNA: 3'- gaGUGCGGa-----------G-GGCGcGGCAGCGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 50087 | 0.67 | 0.309046 |
Target: 5'- --uGCGCCgaccgaaCCCGCGCCG-CGCGa-- -3' miRNA: 3'- gagUGCGGa------GGGCGCGGCaGCGCgaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 3283 | 0.67 | 0.309046 |
Target: 5'- gUCACGCUcuuggcggCCUGCGCCG-CGCGg-- -3' miRNA: 3'- gAGUGCGGa-------GGGCGCGGCaGCGCgaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 46003 | 0.67 | 0.309046 |
Target: 5'- uUCGCGuuCCUgCaCGCGCaaggCGUCGCGCUg -3' miRNA: 3'- gAGUGC--GGAgG-GCGCG----GCAGCGCGAa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 19631 | 0.67 | 0.316352 |
Target: 5'- gCUCGcCGCCgcgcUCCUGC-CCGaUCGCGCg- -3' miRNA: 3'- -GAGU-GCGG----AGGGCGcGGC-AGCGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 29798 | 0.67 | 0.323787 |
Target: 5'- gUCACGCCgUCCGCGCCcauGUUaCGCa- -3' miRNA: 3'- gAGUGCGGaGGGCGCGG---CAGcGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 41958 | 0.67 | 0.323787 |
Target: 5'- -cCGCGCCUUgugCCGCGCCuGUUGC-CUg -3' miRNA: 3'- gaGUGCGGAG---GGCGCGG-CAGCGcGAa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 46304 | 0.66 | 0.346867 |
Target: 5'- aUCgACGCgUCgCGCGCgGcgCGCGCUUc -3' miRNA: 3'- gAG-UGCGgAGgGCGCGgCa-GCGCGAA- -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 21517 | 0.66 | 0.346867 |
Target: 5'- -aCACGUCgccggugCCCGUGCCGcUCGuCGCc- -3' miRNA: 3'- gaGUGCGGa------GGGCGCGGC-AGC-GCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 13387 | 0.66 | 0.354817 |
Target: 5'- cCUCGCGCUccgcggcgcugaUCgCCGCGCgGuUCGCGUc- -3' miRNA: 3'- -GAGUGCGG------------AG-GGCGCGgC-AGCGCGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 13860 | 0.66 | 0.354817 |
Target: 5'- gUCACGCCaUCCGgGCCgGUCGUcagGCg- -3' miRNA: 3'- gAGUGCGGaGGGCgCGG-CAGCG---CGaa -5' |
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24098 | 3' | -62.9 | NC_005262.1 | + | 22364 | 0.66 | 0.362895 |
Target: 5'- -cCGCGCCgCCCGUGUUaGUCgGCGCa- -3' miRNA: 3'- gaGUGCGGaGGGCGCGG-CAG-CGCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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