miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 17260 0.73 0.114394
Target:  5'- cGGCGGccggcGCCGcGCUGGGCUgcugcgcgggcagggGCGUCGCg -3'
miRNA:   3'- uCCGCU-----UGGC-CGGCCCGG---------------CGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 41559 0.72 0.119234
Target:  5'- cAGGCcGGCCGGCgUGGGCgGCG-CgGCCg -3'
miRNA:   3'- -UCCGcUUGGCCG-GCCCGgCGCaG-CGG- -5'
24099 3' -64.8 NC_005262.1 + 61169 0.72 0.119234
Target:  5'- cGGGCGAGCUGa-CGGGCgCGCGgCGCUa -3'
miRNA:   3'- -UCCGCUUGGCcgGCCCG-GCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 30095 0.72 0.119234
Target:  5'- aGGGCGAcgacacGCCGGCC--GCCGCGaaGCCc -3'
miRNA:   3'- -UCCGCU------UGGCCGGccCGGCGCagCGG- -5'
24099 3' -64.8 NC_005262.1 + 49725 0.72 0.119234
Target:  5'- cGGCGAACCGGCgGccgaaGCCGCaccgaCGCCg -3'
miRNA:   3'- uCCGCUUGGCCGgCc----CGGCGca---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 43214 0.72 0.122355
Target:  5'- cGGCGcGCCGcgcgcugcucGCCGGGCUGC-UCGUCu -3'
miRNA:   3'- uCCGCuUGGC----------CGGCCCGGCGcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 15762 0.72 0.125552
Target:  5'- -uGCGGGCgCGGCCGGcuGCUGCGUgGUCu -3'
miRNA:   3'- ucCGCUUG-GCCGGCC--CGGCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 63657 0.72 0.128826
Target:  5'- cGGGCGAACUGGCUGGaauuGCCgGCGaCGgCg -3'
miRNA:   3'- -UCCGCUUGGCCGGCC----CGG-CGCaGCgG- -5'
24099 3' -64.8 NC_005262.1 + 21343 0.72 0.132179
Target:  5'- gAGGCGAucgaGgCGGCCaaGGCCGCG-CGCa -3'
miRNA:   3'- -UCCGCU----UgGCCGGc-CCGGCGCaGCGg -5'
24099 3' -64.8 NC_005262.1 + 36873 0.72 0.135612
Target:  5'- cGGCGAAuCCGGCuCGGGau-CGUCGCg -3'
miRNA:   3'- uCCGCUU-GGCCG-GCCCggcGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 34005 0.72 0.135612
Target:  5'- gGGcGCGGACgGcgugacGCCGGGCCGCaucGUgCGCCg -3'
miRNA:   3'- -UC-CGCUUGgC------CGGCCCGGCG---CA-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 58706 0.72 0.135612
Target:  5'- cGGGCGcgcaccGCCGaGCCGGucGCaCGCGcCGCCg -3'
miRNA:   3'- -UCCGCu-----UGGC-CGGCC--CG-GCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 12416 0.71 0.139127
Target:  5'- cAGGCGcGGCCuuGGCCGGcGUCGCGgacggCGCg -3'
miRNA:   3'- -UCCGC-UUGG--CCGGCC-CGGCGCa----GCGg -5'
24099 3' -64.8 NC_005262.1 + 20743 0.71 0.146409
Target:  5'- cGGCGcgcgguGCCGGCCGGGUCGaUGUacucguaGCUg -3'
miRNA:   3'- uCCGCu-----UGGCCGGCCCGGC-GCAg------CGG- -5'
24099 3' -64.8 NC_005262.1 + 52700 0.71 0.146409
Target:  5'- aAGGCc-GCCGGCCGacgccggacgaGGCCGCGcUGCUg -3'
miRNA:   3'- -UCCGcuUGGCCGGC-----------CCGGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 12262 0.71 0.149798
Target:  5'- -cGCGAGCCGGUCGccguguugcgcacGGUCGUcUCGCCg -3'
miRNA:   3'- ucCGCUUGGCCGGC-------------CCGGCGcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 40318 0.71 0.151711
Target:  5'- cGGGCGAACCucGCCcagccauucguccaGGCCGCGcaugCGCCa -3'
miRNA:   3'- -UCCGCUUGGc-CGGc-------------CCGGCGCa---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 46918 0.71 0.154036
Target:  5'- uGGuGCGGcCCGGCgCGcGGCCGgG-CGCCu -3'
miRNA:   3'- -UC-CGCUuGGCCG-GC-CCGGCgCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 4663 0.7 0.162022
Target:  5'- cGGCGAcgCGGCCcGGCCGguUCGCCu -3'
miRNA:   3'- uCCGCUugGCCGGcCCGGCgcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 34626 0.7 0.162022
Target:  5'- cGGCGA--CGGCCGccugacgcauGGUCGCG-CGCCa -3'
miRNA:   3'- uCCGCUugGCCGGC----------CCGGCGCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.