miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 5' -53.9 NC_005262.1 + 61641 0.68 0.727953
Target:  5'- cGAGGGCGagGAGGAAGU-GCUguacCGCGGc -3'
miRNA:   3'- cCUCCUGCg-CUUCUUCGuCGA----GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 61434 0.73 0.433554
Target:  5'- cGAGGAauuccacguCGCGAAGAAgGCGGCggACGGc -3'
miRNA:   3'- cCUCCU---------GCGCUUCUU-CGUCGagUGCC- -5'
24099 5' -53.9 NC_005262.1 + 61127 0.67 0.778958
Target:  5'- aGGGGacgguguacGACGCGcuGgcGCAGCagaUCGCGGc -3'
miRNA:   3'- -CCUC---------CUGCGCuuCuuCGUCG---AGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 60124 0.66 0.826251
Target:  5'- cGAGGGCGCcAGcGucGCGGCgaaggCAUGGg -3'
miRNA:   3'- cCUCCUGCGcUU-CuuCGUCGa----GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 59164 1.14 0.000923
Target:  5'- uGGAGGACGCGAAGAAGCAGCUCACGGg -3'
miRNA:   3'- -CCUCCUGCGCUUCUUCGUCGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 57477 0.67 0.798395
Target:  5'- cGGcGGGCGcCGAcgAGAGGCGGCcgGCGa -3'
miRNA:   3'- -CCuCCUGC-GCU--UCUUCGUCGagUGCc -5'
24099 5' -53.9 NC_005262.1 + 56880 0.66 0.826251
Target:  5'- cGAGGAaacgaGCGGAuGAAGUggGGCaCGCGGc -3'
miRNA:   3'- cCUCCUg----CGCUU-CUUCG--UCGaGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 56716 0.69 0.685395
Target:  5'- uGGAGGACGUGuccGAGGCgucGGCguucgaCAUGGc -3'
miRNA:   3'- -CCUCCUGCGCuu-CUUCG---UCGa-----GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 56105 0.68 0.738385
Target:  5'- cGAGGAgGCGGcgcagcucucacAGAucuuuGGCGugccGCUCGCGGa -3'
miRNA:   3'- cCUCCUgCGCU------------UCU-----UCGU----CGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 53920 0.7 0.602871
Target:  5'- ---cGACGCGcuGAAGCaggcgcagcucgaccAGCUCACGGa -3'
miRNA:   3'- ccucCUGCGCuuCUUCG---------------UCGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 53468 0.69 0.706817
Target:  5'- cGAGGACaacgGCGu-GAAGUGGCUCggcACGGc -3'
miRNA:   3'- cCUCCUG----CGCuuCUUCGUCGAG---UGCC- -5'
24099 5' -53.9 NC_005262.1 + 52972 0.67 0.768009
Target:  5'- cGGcGGACGCGcaugcgcuGGucgugaucgucgcGGCAGCUCGCGc -3'
miRNA:   3'- -CCuCCUGCGCuu------CU-------------UCGUCGAGUGCc -5'
24099 5' -53.9 NC_005262.1 + 52708 0.66 0.841255
Target:  5'- cGGccGACGcCGGAcGAGGCcgcgcugcugacgaAGUUCACGGg -3'
miRNA:   3'- -CCucCUGC-GCUU-CUUCG--------------UCGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 52413 0.71 0.587703
Target:  5'- uGGAGGcgauCGCGGAGgcGCGGCaaagCGCa- -3'
miRNA:   3'- -CCUCCu---GCGCUUCuuCGUCGa---GUGcc -5'
24099 5' -53.9 NC_005262.1 + 51195 0.66 0.829835
Target:  5'- gGGAGGGCGCGcucauccgcgAcgccucgccggcggcAGcAGCAGCUCgACGa -3'
miRNA:   3'- -CCUCCUGCGC----------U---------------UCuUCGUCGAG-UGCc -5'
24099 5' -53.9 NC_005262.1 + 50455 0.7 0.642037
Target:  5'- ----cGCGCGAGGAGGaCGGCcgCACGGu -3'
miRNA:   3'- ccuccUGCGCUUCUUC-GUCGa-GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 49853 0.67 0.788757
Target:  5'- cGGugccGGCgGCGGuaccGGAAGCAGCUCAgcCGGc -3'
miRNA:   3'- -CCuc--CUG-CGCU----UCUUCGUCGAGU--GCC- -5'
24099 5' -53.9 NC_005262.1 + 49154 0.7 0.630061
Target:  5'- cGGuGGGCGUGcAGGccgcaucggccgcAGCGGCgcgCACGGc -3'
miRNA:   3'- -CCuCCUGCGCuUCU-------------UCGUCGa--GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 47643 0.69 0.662689
Target:  5'- cGGAGGacaagaaGCGCGAGGcgaucGAGCAGgaCAUGa -3'
miRNA:   3'- -CCUCC-------UGCGCUUC-----UUCGUCgaGUGCc -5'
24099 5' -53.9 NC_005262.1 + 44913 0.67 0.769011
Target:  5'- gGGAcuGGAUGCGGcgcaAGgcGCuGCUC-CGGa -3'
miRNA:   3'- -CCU--CCUGCGCU----UCuuCGuCGAGuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.