Results 1 - 20 of 50 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 10627 | 0.66 | 0.860557 |
Target: 5'- cGAcGGACGCGAAG-GGCGGgUUGCc- -3' miRNA: 3'- cCU-CCUGCGCUUCuUCGUCgAGUGcc -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 52972 | 0.67 | 0.768009 |
Target: 5'- cGGcGGACGCGcaugcgcuGGucgugaucgucgcGGCAGCUCGCGc -3' miRNA: 3'- -CCuCCUGCGCuu------CU-------------UCGUCGAGUGCc -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 9468 | 0.67 | 0.807864 |
Target: 5'- cGAGGugccgaGCGCGucGAugacguccuGGCGGCUCAUGu -3' miRNA: 3'- cCUCC------UGCGCuuCU---------UCGUCGAGUGCc -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 10461 | 0.66 | 0.817153 |
Target: 5'- --cGGuCgGCGAGGuAGCGGCgcgCGCGGu -3' miRNA: 3'- ccuCCuG-CGCUUCuUCGUCGa--GUGCC- -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 51195 | 0.66 | 0.829835 |
Target: 5'- gGGAGGGCGCGcucauccgcgAcgccucgccggcggcAGcAGCAGCUCgACGa -3' miRNA: 3'- -CCUCCUGCGC----------U---------------UCuUCGUCGAG-UGCc -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 13792 | 0.66 | 0.843839 |
Target: 5'- cGGuGGGCGCc--GgcGCGGCUUcaucgGCGGg -3' miRNA: 3'- -CCuCCUGCGcuuCuuCGUCGAG-----UGCC- -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 40519 | 0.7 | 0.63115 |
Target: 5'- gGGGcGGGCGUGAAGAAGCG----ACGGg -3' miRNA: 3'- -CCU-CCUGCGCUUCUUCGUcgagUGCC- -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 44913 | 0.67 | 0.769011 |
Target: 5'- gGGAcuGGAUGCGGcgcaAGgcGCuGCUC-CGGa -3' miRNA: 3'- -CCU--CCUGCGCU----UCuuCGuCGAGuGCC- -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 56880 | 0.66 | 0.826251 |
Target: 5'- cGAGGAaacgaGCGGAuGAAGUggGGCaCGCGGc -3' miRNA: 3'- cCUCCUg----CGCUU-CUUCG--UCGaGUGCC- -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 9683 | 0.66 | 0.852311 |
Target: 5'- cGAGGGCGCcgucgacgucGAGgcGCAGCa-GCGGg -3' miRNA: 3'- cCUCCUGCGc---------UUCuuCGUCGagUGCC- -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 43577 | 0.66 | 0.860557 |
Target: 5'- --uGGGCgcuGCGAuuGAGGCGGCUUugGa -3' miRNA: 3'- ccuCCUG---CGCUu-CUUCGUCGAGugCc -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 15827 | 0.72 | 0.492786 |
Target: 5'- gGGAGaGGCGCG-AGAGGUcGUUCGCGc -3' miRNA: 3'- -CCUC-CUGCGCuUCUUCGuCGAGUGCc -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 28946 | 0.66 | 0.859743 |
Target: 5'- uGAGGgucaugugcucgcGCGCGAGGAAGUcggggAGCUgAuCGGc -3' miRNA: 3'- cCUCC-------------UGCGCUUCUUCG-----UCGAgU-GCC- -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 57477 | 0.67 | 0.798395 |
Target: 5'- cGGcGGGCGcCGAcgAGAGGCGGCcgGCGa -3' miRNA: 3'- -CCuCCUGC-GCU--UCUUCGUCGagUGCc -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 36177 | 0.77 | 0.263088 |
Target: 5'- aGGAGG-CGCGAGu--GCAGCUCgACGGc -3' miRNA: 3'- -CCUCCuGCGCUUcuuCGUCGAG-UGCC- -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 56105 | 0.68 | 0.738385 |
Target: 5'- cGAGGAgGCGGcgcagcucucacAGAucuuuGGCGugccGCUCGCGGa -3' miRNA: 3'- cCUCCUgCGCU------------UCU-----UCGU----CGAGUGCC- -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 50455 | 0.7 | 0.642037 |
Target: 5'- ----cGCGCGAGGAGGaCGGCcgCACGGu -3' miRNA: 3'- ccuccUGCGCUUCUUC-GUCGa-GUGCC- -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 12820 | 0.7 | 0.63115 |
Target: 5'- --cGGcGCGUGAAGAAggagcGCGGCcUCGCGGg -3' miRNA: 3'- ccuCC-UGCGCUUCUU-----CGUCG-AGUGCC- -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 49154 | 0.7 | 0.630061 |
Target: 5'- cGGuGGGCGUGcAGGccgcaucggccgcAGCGGCgcgCACGGc -3' miRNA: 3'- -CCuCCUGCGCuUCU-------------UCGUCGa--GUGCC- -5' |
|||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 16598 | 0.7 | 0.609388 |
Target: 5'- uGGucGAgGCGgcGAAGCAGC-CGCGu -3' miRNA: 3'- -CCucCUgCGCuuCUUCGUCGaGUGCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home