miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 63793 0.7 0.425482
Target:  5'- -cGCcCGCGCAGGAGgGGAAC-AGUa -3'
miRNA:   3'- guCGuGCGCGUCCUCgCUUUGcUCGc -5'
24100 5' -56.5 NC_005262.1 + 63053 0.68 0.535332
Target:  5'- cCAGCAUGCGCcGGcacgucaucgcgGGCGAGuauGCG-GCGg -3'
miRNA:   3'- -GUCGUGCGCGuCC------------UCGCUU---UGCuCGC- -5'
24100 5' -56.5 NC_005262.1 + 62901 0.66 0.7008
Target:  5'- cCAGCGCGCcgacgaGCuGGcGCGcaaucucauggcaaaGGACGAGCGc -3'
miRNA:   3'- -GUCGUGCG------CGuCCuCGC---------------UUUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 61965 0.7 0.463969
Target:  5'- -cGCAUGCGCAGccuGCG--GCGAGCa -3'
miRNA:   3'- guCGUGCGCGUCcu-CGCuuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 61914 0.68 0.567114
Target:  5'- aGGCACGgGCAauGGGGCGGAugGcuucaccuacGCGa -3'
miRNA:   3'- gUCGUGCgCGU--CCUCGCUUugCu---------CGC- -5'
24100 5' -56.5 NC_005262.1 + 61790 0.67 0.642677
Target:  5'- gCAGCGCcgugGCGU-GGAGCau-GCGAGCa -3'
miRNA:   3'- -GUCGUG----CGCGuCCUCGcuuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 61618 0.7 0.41616
Target:  5'- aAGCGCGCGCgccugaAGGAGCucGA-GGGCGa -3'
miRNA:   3'- gUCGUGCGCG------UCCUCGcuUUgCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 61152 0.73 0.278241
Target:  5'- gCAGCAgauCGCgGCGGcGGGCGAgcuGACGGGCGc -3'
miRNA:   3'- -GUCGU---GCG-CGUC-CUCGCU---UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 59541 0.68 0.545863
Target:  5'- aAGCGCGCaauggGCcacgAGGAGCGcGAgGAGCa -3'
miRNA:   3'- gUCGUGCG-----CG----UCCUCGCuUUgCUCGc -5'
24100 5' -56.5 NC_005262.1 + 59258 1.07 0.001171
Target:  5'- uCAGCACGCGCAGGAGCGAAACGAGCGc -3'
miRNA:   3'- -GUCGUGCGCGUCCUCGCUUUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 59058 0.79 0.12532
Target:  5'- aAGCAgGUGCAGGAGCGcaucaagaagcuGACGGGCGu -3'
miRNA:   3'- gUCGUgCGCGUCCUCGCu-----------UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 59055 0.66 0.685846
Target:  5'- uGGCGcCG-GCAGGAGCu---CGAGCa -3'
miRNA:   3'- gUCGU-GCgCGUCCUCGcuuuGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 57625 0.67 0.58857
Target:  5'- -cGCGagGCGCAGGAGCGcguGACGAu-- -3'
miRNA:   3'- guCGUg-CGCGUCCUCGCu--UUGCUcgc -5'
24100 5' -56.5 NC_005262.1 + 57476 0.67 0.58857
Target:  5'- gCGGCGgGCGCcgacgAGaGGCGGccGGCGAGCGc -3'
miRNA:   3'- -GUCGUgCGCG-----UCcUCGCU--UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 57271 0.68 0.574603
Target:  5'- cCAGCuCGCGCAGcucacggcccgcguGcAGCaGAACGAGCGc -3'
miRNA:   3'- -GUCGuGCGCGUC--------------C-UCGcUUUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 56945 0.67 0.58857
Target:  5'- -cGCACGCcgauccGCGcGGGCGAGuucGCGGGCGu -3'
miRNA:   3'- guCGUGCG------CGUcCUCGCUU---UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 56758 0.66 0.653508
Target:  5'- -cGCugGCGUcGG-GCGA--CGAGCGc -3'
miRNA:   3'- guCGugCGCGuCCuCGCUuuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 55416 0.66 0.685846
Target:  5'- gCAGCucgaGCGCcggcuGGAgGCGAAACaGGGCa -3'
miRNA:   3'- -GUCGug--CGCGu----CCU-CGCUUUG-CUCGc -5'
24100 5' -56.5 NC_005262.1 + 54126 0.67 0.610167
Target:  5'- aCGGUguuUGCGCAGGAGCG--GC-AGCGc -3'
miRNA:   3'- -GUCGu--GCGCGUCCUCGCuuUGcUCGC- -5'
24100 5' -56.5 NC_005262.1 + 54039 0.66 0.675103
Target:  5'- aCAGCACcaucgaGCGCAcGGGCGAcGACG-GCa -3'
miRNA:   3'- -GUCGUG------CGCGUcCUCGCU-UUGCuCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.