miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 31101 0.74 0.488676
Target:  5'- --uGUCGCccaccuGGAGgccgGCgGCCGGCAGCGCg -3'
miRNA:   3'- uagUAGCG------UUUCa---UG-CGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 60545 0.74 0.488676
Target:  5'- uUCGacCGCAAGGgcacgcugACGCCGGCGcucgGCGCg -3'
miRNA:   3'- uAGUa-GCGUUUCa-------UGCGGCCGU----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 33794 0.73 0.499214
Target:  5'- cUCAUCGCuc---GCGCgGGCAACGUc -3'
miRNA:   3'- uAGUAGCGuuucaUGCGgCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 39131 0.73 0.499214
Target:  5'- uUUGUCGCucaacgACGCUGGCGACGUa -3'
miRNA:   3'- uAGUAGCGuuuca-UGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 51750 0.73 0.509852
Target:  5'- uUCAgCGUGAGGUcugccAUGCCGGgGACGCg -3'
miRNA:   3'- uAGUaGCGUUUCA-----UGCGGCCgUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 48605 0.73 0.509852
Target:  5'- uUCGUCGCcuugcAGaACGCCGcGUAGCGCu -3'
miRNA:   3'- uAGUAGCGuu---UCaUGCGGC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 27056 0.73 0.520584
Target:  5'- cGUCGUgCGCAGAacUGCGCCcGCGGCGCc -3'
miRNA:   3'- -UAGUA-GCGUUUc-AUGCGGcCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 10976 0.73 0.520584
Target:  5'- uGUCGgcgCGCcGGGaACGCCGGUcGCGCu -3'
miRNA:   3'- -UAGUa--GCGuUUCaUGCGGCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 17604 0.73 0.542302
Target:  5'- -gCAgcgCGCGGAGcuggaGCGCCaGCAGCGCg -3'
miRNA:   3'- uaGUa--GCGUUUCa----UGCGGcCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 43287 0.72 0.553275
Target:  5'- gGUCGUCGCGAGcgccGCGCCGauGguGCGCg -3'
miRNA:   3'- -UAGUAGCGUUUca--UGCGGC--CguUGCG- -5'
24101 3' -51.8 NC_005262.1 + 35213 0.72 0.553275
Target:  5'- -aCGUcCGCAAGGaUGCggagGUCGGCGGCGCg -3'
miRNA:   3'- uaGUA-GCGUUUC-AUG----CGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 12413 0.72 0.553275
Target:  5'- gGUCAggCGCGGccUugGCCGGCGuCGCg -3'
miRNA:   3'- -UAGUa-GCGUUucAugCGGCCGUuGCG- -5'
24101 3' -51.8 NC_005262.1 + 4641 0.72 0.575407
Target:  5'- uUCuUCGCGuccuccaUGCGCgCGGCGACGCg -3'
miRNA:   3'- uAGuAGCGUuuc----AUGCG-GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 17547 0.72 0.575407
Target:  5'- gGUCGcgCGCGAGGcgGCaGCCgcGGCGGCGCg -3'
miRNA:   3'- -UAGUa-GCGUUUCa-UG-CGG--CCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 11638 0.72 0.575407
Target:  5'- -cCAUCgGCucGGcgGCGCCGGCGucGCGCu -3'
miRNA:   3'- uaGUAG-CGuuUCa-UGCGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 36260 0.72 0.575407
Target:  5'- gAUCGUCaccgauGCAGAugcGUggGCGCgCGGCGACGCg -3'
miRNA:   3'- -UAGUAG------CGUUU---CA--UGCG-GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 41405 0.72 0.586551
Target:  5'- uUCAUCGUcg---GCGCCGGCAccucguauGCGCc -3'
miRNA:   3'- uAGUAGCGuuucaUGCGGCCGU--------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 11564 0.72 0.586551
Target:  5'- cAUCAcgCGCGcuGcUAUGCCGGCGGCGg -3'
miRNA:   3'- -UAGUa-GCGUuuC-AUGCGGCCGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 17248 0.72 0.597735
Target:  5'- -gCGUCGCgGGAGcgGCgGCCGGCGccGCGCu -3'
miRNA:   3'- uaGUAGCG-UUUCa-UG-CGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 51206 0.71 0.620184
Target:  5'- cUCAUcCGCGAcGccuCGCCGGCGGCaGCa -3'
miRNA:   3'- uAGUA-GCGUUuCau-GCGGCCGUUG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.