miRNA display CGI


Results 21 - 40 of 199 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 26152 0.74 0.086247
Target:  5'- uGGGUGCUccaaCGCGUcgAGCAcgaguGGCGCGCGAUc -3'
miRNA:   3'- -UCCGCGA----GCGCG--UCGU-----CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 24731 0.74 0.086247
Target:  5'- -cGCGCUgGCGCGcGCGaucGGCGUGCGGCc -3'
miRNA:   3'- ucCGCGAgCGCGU-CGU---CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 34104 0.74 0.087186
Target:  5'- cGGGCGgUUGCGCaggauucgcggguugGGCGGGCuGCGCGGg -3'
miRNA:   3'- -UCCGCgAGCGCG---------------UCGUCCG-CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 43837 0.74 0.088612
Target:  5'- cGGGCcgGCcgCGCGCGGCGGuGCGC-CGGCa -3'
miRNA:   3'- -UCCG--CGa-GCGCGUCGUC-CGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 10441 0.74 0.088612
Target:  5'- uGGCGCcgaucagguUCGCGCGGUcGGCGagguaGCGGCg -3'
miRNA:   3'- uCCGCG---------AGCGCGUCGuCCGCg----CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 44974 0.74 0.088612
Target:  5'- gAGGCGagggccgaCGUGCAGCAGucCGCGCGGCa -3'
miRNA:   3'- -UCCGCga------GCGCGUCGUCc-GCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 18726 0.74 0.088612
Target:  5'- aAGGCGCUCcucagcuucgGCGCGGCucGGCGCGUcguaGAUg -3'
miRNA:   3'- -UCCGCGAG----------CGCGUCGu-CCGCGCG----CUG- -5'
24101 5' -63.9 NC_005262.1 + 44151 0.74 0.091039
Target:  5'- cGGaCGCgCGCGCgaucgGGCAGGaGCGCGGCg -3'
miRNA:   3'- uCC-GCGaGCGCG-----UCGUCCgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 46899 0.73 0.092775
Target:  5'- cGGUGCggGCGguGCGguguggugcggcccGGCGCGCGGCc -3'
miRNA:   3'- uCCGCGagCGCguCGU--------------CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 52334 0.73 0.093528
Target:  5'- -cGCGCgcgaGCGCGGUAGGCacgaugcgcggGCGCGGCg -3'
miRNA:   3'- ucCGCGag--CGCGUCGUCCG-----------CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 32567 0.73 0.096082
Target:  5'- uGGGCGCgUCGauCGaCAGGCGCGCGAUc -3'
miRNA:   3'- -UCCGCG-AGCgcGUcGUCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 50651 0.73 0.096082
Target:  5'- -uGUGC-CGCGCAGC--GCGCGCGGCg -3'
miRNA:   3'- ucCGCGaGCGCGUCGucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 13646 0.73 0.098702
Target:  5'- cAGGCGgUCGCGCAGCucAGGCuCGCu-- -3'
miRNA:   3'- -UCCGCgAGCGCGUCG--UCCGcGCGcug -5'
24101 5' -63.9 NC_005262.1 + 11415 0.73 0.101389
Target:  5'- -cGCGC-CGCGCcgGGCcgccgaAGGUGCGCGACa -3'
miRNA:   3'- ucCGCGaGCGCG--UCG------UCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 33927 0.73 0.104145
Target:  5'- cGGUGC-CGagcuCGCGGCGGGCaCGCGGCa -3'
miRNA:   3'- uCCGCGaGC----GCGUCGUCCGcGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 6505 0.73 0.106971
Target:  5'- cGGCGCUCGUucugcuGCAcGCGGGCcgugagcuGCGCGAg -3'
miRNA:   3'- uCCGCGAGCG------CGU-CGUCCG--------CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 13697 0.73 0.106971
Target:  5'- cGGCuucuGUUCGCGCGGCGcggguucggucGGCGCaGCGGCc -3'
miRNA:   3'- uCCG----CGAGCGCGUCGU-----------CCGCG-CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 45398 0.73 0.106971
Target:  5'- gAGGCGCUCGgaagcCGguGCGGGuCGUGCaACg -3'
miRNA:   3'- -UCCGCGAGC-----GCguCGUCC-GCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 21739 0.73 0.106971
Target:  5'- aAGGCGCucacggaagaUCGCGCAGC-GGCaCGCGuCa -3'
miRNA:   3'- -UCCGCG----------AGCGCGUCGuCCGcGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 51161 0.72 0.115888
Target:  5'- aAGuCGCcgagCGCGCAGCAGGCaGC-CGACg -3'
miRNA:   3'- -UCcGCGa---GCGCGUCGUCCG-CGcGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.