Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24103 | 5' | -56.6 | NC_005262.1 | + | 12472 | 0.71 | 0.428242 |
Target: 5'- uCGAUCuugccGCGCGCGgaUGCGCCC-AUCUg -3' miRNA: 3'- -GCUAGuc---CGCGCGU--ACGUGGGcUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 8956 | 0.7 | 0.437643 |
Target: 5'- cCGGUC-GGCGCGC-UGCgugUCGGUCCa -3' miRNA: 3'- -GCUAGuCCGCGCGuACGug-GGCUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 62109 | 0.7 | 0.437643 |
Target: 5'- uGAccUCaAGGCGCGCAUGgACugggCCGaAUCCa -3' miRNA: 3'- gCU--AG-UCCGCGCGUACgUG----GGC-UAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 40344 | 0.7 | 0.437643 |
Target: 5'- ---cCAGGcCGCGCAUGCGCCa-GUCg -3' miRNA: 3'- gcuaGUCC-GCGCGUACGUGGgcUAGg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 33890 | 0.7 | 0.44716 |
Target: 5'- aCGAUCGuGCGUcgGCcgGCgGCCCGAUCg -3' miRNA: 3'- -GCUAGUcCGCG--CGuaCG-UGGGCUAGg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 51679 | 0.7 | 0.455823 |
Target: 5'- gCGAUCugcucGCGCGCAcggcggcgcugauUGCGCCCGAa-- -3' miRNA: 3'- -GCUAGuc---CGCGCGU-------------ACGUGGGCUagg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 53368 | 0.7 | 0.466533 |
Target: 5'- uGAUC-GGCGC-CAUGCGCCUG--CCg -3' miRNA: 3'- gCUAGuCCGCGcGUACGUGGGCuaGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 47801 | 0.7 | 0.466533 |
Target: 5'- -cGUCGGuGcCGCGC-UGCACgCCGAUCUc -3' miRNA: 3'- gcUAGUC-C-GCGCGuACGUG-GGCUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 3632 | 0.7 | 0.476381 |
Target: 5'- aGGUCcaucggcuGGGCGCGCA-GCuucuCCCGGUUg -3' miRNA: 3'- gCUAG--------UCCGCGCGUaCGu---GGGCUAGg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 18671 | 0.7 | 0.476381 |
Target: 5'- aCGuUCuGGCGCGCGguguucgcgGCACCCG--CCg -3' miRNA: 3'- -GCuAGuCCGCGCGUa--------CGUGGGCuaGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 8107 | 0.69 | 0.495371 |
Target: 5'- aGGUCGGGaaGCGCAagaGCAUcccgaagCCGAUCCg -3' miRNA: 3'- gCUAGUCCg-CGCGUa--CGUG-------GGCUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 58649 | 0.69 | 0.496379 |
Target: 5'- gCGGcCGGGCGCGCGaGUucuacgaucaaGCCCGAgCCc -3' miRNA: 3'- -GCUaGUCCGCGCGUaCG-----------UGGGCUaGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 37104 | 0.69 | 0.496379 |
Target: 5'- cCGAUCGGGCcgGCcacgGCAcUGCACgUUGAUCCa -3' miRNA: 3'- -GCUAGUCCG--CG----CGU-ACGUG-GGCUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 51959 | 0.69 | 0.50652 |
Target: 5'- cCGcUCGcGCGCGCcUGCGCUCGAaacugUCCg -3' miRNA: 3'- -GCuAGUcCGCGCGuACGUGGGCU-----AGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 18155 | 0.69 | 0.50652 |
Target: 5'- ---cCGGGaGCGCGUGCccGCCUGAUCg -3' miRNA: 3'- gcuaGUCCgCGCGUACG--UGGGCUAGg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 26883 | 0.69 | 0.50652 |
Target: 5'- aCGAUCGagugggccGGCGCGUccGUugUCGAUCa -3' miRNA: 3'- -GCUAGU--------CCGCGCGuaCGugGGCUAGg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 58604 | 0.69 | 0.50652 |
Target: 5'- uCGGUCGcgccGGcCGCGCccGCGCCCGcgacgCCg -3' miRNA: 3'- -GCUAGU----CC-GCGCGuaCGUGGGCua---GG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 49340 | 0.69 | 0.50652 |
Target: 5'- aCGAgCAGGCGCGCGccGCGCUCGc--- -3' miRNA: 3'- -GCUaGUCCGCGCGUa-CGUGGGCuagg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 5827 | 0.69 | 0.514695 |
Target: 5'- aGAUgCGGGCGCGCcaauuucaagcGCGCUCGcgCCc -3' miRNA: 3'- gCUA-GUCCGCGCGua---------CGUGGGCuaGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 62708 | 0.69 | 0.516748 |
Target: 5'- aCGAUgGGuaauCGCGCAcGCACCCuGAUCg -3' miRNA: 3'- -GCUAgUCc---GCGCGUaCGUGGG-CUAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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