Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24104 | 3' | -53.1 | NC_005262.1 | + | 60345 | 1.12 | 0.00125 |
Target: 5'- gCGGCUACCUGAAGGACGGCAAGAACCu -3' miRNA: 3'- -GCCGAUGGACUUCCUGCCGUUCUUGG- -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 51252 | 0.8 | 0.199817 |
Target: 5'- cCGGCUACg-GuAAGGACGGCAAgcuGAACCu -3' miRNA: 3'- -GCCGAUGgaC-UUCCUGCCGUU---CUUGG- -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 12156 | 0.78 | 0.265819 |
Target: 5'- aGGUUucgaACCUGAAGGccgcgcugucugcGCGGCAGGAGCa -3' miRNA: 3'- gCCGA----UGGACUUCC-------------UGCCGUUCUUGg -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 28817 | 0.76 | 0.317668 |
Target: 5'- cCGGCUGCCUGGAGcuucgacuuGCGGcCGAGcGCCg -3' miRNA: 3'- -GCCGAUGGACUUCc--------UGCC-GUUCuUGG- -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 56791 | 0.76 | 0.333585 |
Target: 5'- uGGCcgGCCUGAAGGccgacgucgaGCGGCuGGAGCg -3' miRNA: 3'- gCCGa-UGGACUUCC----------UGCCGuUCUUGg -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 45939 | 0.76 | 0.350078 |
Target: 5'- gGGCUACgUcGAGGACGGCAucgAGuACCu -3' miRNA: 3'- gCCGAUGgAcUUCCUGCCGU---UCuUGG- -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 30575 | 0.75 | 0.384772 |
Target: 5'- aCGGCaGCa---AGGACGGCAAGAccGCCa -3' miRNA: 3'- -GCCGaUGgacuUCCUGCCGUUCU--UGG- -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 190 | 0.75 | 0.384772 |
Target: 5'- aCGGCUucaugguccacGCCggcGGGGGCGGCG-GAGCCa -3' miRNA: 3'- -GCCGA-----------UGGac-UUCCUGCCGUuCUUGG- -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 60164 | 0.74 | 0.42834 |
Target: 5'- cCGGCcGCCgUGAAGGcgcucggccaguggGCGGCAaccggcaaGGAGCCg -3' miRNA: 3'- -GCCGaUGG-ACUUCC--------------UGCCGU--------UCUUGG- -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 49127 | 0.72 | 0.510775 |
Target: 5'- aGGCUGCCUaucuggcGAAGGuCGGCAcgguGGGCg -3' miRNA: 3'- gCCGAUGGA-------CUUCCuGCCGUu---CUUGg -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 49652 | 0.72 | 0.532968 |
Target: 5'- uCGGCgGCCUGcAAGGcgGCGGCAugGGGAUg -3' miRNA: 3'- -GCCGaUGGAC-UUCC--UGCCGU--UCUUGg -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 45777 | 0.72 | 0.532968 |
Target: 5'- uCGGC-AUCgcggcGAAGGGCGGCGgcgugcugauccAGGACCg -3' miRNA: 3'- -GCCGaUGGa----CUUCCUGCCGU------------UCUUGG- -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 47635 | 0.72 | 0.543658 |
Target: 5'- gCGGCUGCC-GGAGGACaagaagcgcgaGGCGAucGAGCa -3' miRNA: 3'- -GCCGAUGGaCUUCCUG-----------CCGUU--CUUGg -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 17098 | 0.72 | 0.543658 |
Target: 5'- gCGGCggGCCgcgaGGAGGuccaccgcGCGGCGAuGGACCa -3' miRNA: 3'- -GCCGa-UGGa---CUUCC--------UGCCGUU-CUUGG- -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 48752 | 0.71 | 0.576112 |
Target: 5'- gGGaagaACCUGAAGGuCGGCGcGAACa -3' miRNA: 3'- gCCga--UGGACUUCCuGCCGUuCUUGg -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 29457 | 0.71 | 0.576112 |
Target: 5'- aCGGCgucgaugaacGCCUGAuagugcAGGGCGGCGAccguGCCg -3' miRNA: 3'- -GCCGa---------UGGACU------UCCUGCCGUUcu--UGG- -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 29180 | 0.71 | 0.58594 |
Target: 5'- aGGCgGCCgucgccgagcugaUGGAGGucauCGGCAAGAuGCCg -3' miRNA: 3'- gCCGaUGG-------------ACUUCCu---GCCGUUCU-UGG- -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 39946 | 0.71 | 0.608981 |
Target: 5'- gCGGC-ACCgGcAAGGGCGGCGu--GCCg -3' miRNA: 3'- -GCCGaUGGaC-UUCCUGCCGUucuUGG- -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 16098 | 0.7 | 0.631009 |
Target: 5'- aCGGCgcggGCCUGAAGGAcuuccuCGGCGcGcGCa -3' miRNA: 3'- -GCCGa---UGGACUUCCU------GCCGUuCuUGg -5' |
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24104 | 3' | -53.1 | NC_005262.1 | + | 29350 | 0.7 | 0.642029 |
Target: 5'- gGGCaGCCcGGAGcGaACGGCA-GAACCu -3' miRNA: 3'- gCCGaUGGaCUUC-C-UGCCGUuCUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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