miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24104 3' -53.1 NC_005262.1 + 190 0.75 0.384772
Target:  5'- aCGGCUucaugguccacGCCggcGGGGGCGGCG-GAGCCa -3'
miRNA:   3'- -GCCGA-----------UGGac-UUCCUGCCGUuCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 359 0.68 0.78052
Target:  5'- cCGGCUGCU---GGG-UGGCGAGGAUg -3'
miRNA:   3'- -GCCGAUGGacuUCCuGCCGUUCUUGg -5'
24104 3' -53.1 NC_005262.1 + 987 0.7 0.65304
Target:  5'- uGGCgACCUGcGGGGCGGgGcgguguAGAGCUu -3'
miRNA:   3'- gCCGaUGGACuUCCUGCCgU------UCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 1299 0.69 0.728971
Target:  5'- aCGGCUaucaGCCUGAgcAGuGACGGUGgacuucAGAGCg -3'
miRNA:   3'- -GCCGA----UGGACU--UC-CUGCCGU------UCUUGg -5'
24104 3' -53.1 NC_005262.1 + 1853 0.66 0.870777
Target:  5'- gCGGUUGCCUGcuuGGuCGcGUAGGugaAGCCa -3'
miRNA:   3'- -GCCGAUGGACuu-CCuGC-CGUUC---UUGG- -5'
24104 3' -53.1 NC_005262.1 + 4893 0.66 0.862732
Target:  5'- gGGCcgccgGCCUGAucgcgcAGcGCGGCAGcAGCCa -3'
miRNA:   3'- gCCGa----UGGACU------UCcUGCCGUUcUUGG- -5'
24104 3' -53.1 NC_005262.1 + 5048 0.67 0.828222
Target:  5'- cCGGC-GCCUGAucGGCGgGCAGGc-CCg -3'
miRNA:   3'- -GCCGaUGGACUucCUGC-CGUUCuuGG- -5'
24104 3' -53.1 NC_005262.1 + 5750 0.66 0.870777
Target:  5'- uGGCggggGCCaguaGAAGGACGGUccu-GCCc -3'
miRNA:   3'- gCCGa---UGGa---CUUCCUGCCGuucuUGG- -5'
24104 3' -53.1 NC_005262.1 + 7260 0.67 0.819055
Target:  5'- uCGcGCUGCUcGAcGGAUGcCGGGAACCa -3'
miRNA:   3'- -GC-CGAUGGaCUuCCUGCcGUUCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 9126 0.66 0.854446
Target:  5'- gCGGCUAU---GAGGAcCGGCGccGGGCCg -3'
miRNA:   3'- -GCCGAUGgacUUCCU-GCCGUu-CUUGG- -5'
24104 3' -53.1 NC_005262.1 + 12156 0.78 0.265819
Target:  5'- aGGUUucgaACCUGAAGGccgcgcugucugcGCGGCAGGAGCa -3'
miRNA:   3'- gCCGA----UGGACUUCC-------------UGCCGUUCUUGg -5'
24104 3' -53.1 NC_005262.1 + 12935 0.69 0.72791
Target:  5'- gCGGC-GCgCUGAAGGGCGuGCGcGAcggcaucGCCg -3'
miRNA:   3'- -GCCGaUG-GACUUCCUGC-CGUuCU-------UGG- -5'
24104 3' -53.1 NC_005262.1 + 14297 0.7 0.664031
Target:  5'- aGcGUUGCgUGGacgggAGGGCGGCG-GAACCg -3'
miRNA:   3'- gC-CGAUGgACU-----UCCUGCCGUuCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 16098 0.7 0.631009
Target:  5'- aCGGCgcggGCCUGAAGGAcuuccuCGGCGcGcGCa -3'
miRNA:   3'- -GCCGa---UGGACUUCCU------GCCGUuCuUGg -5'
24104 3' -53.1 NC_005262.1 + 17098 0.72 0.543658
Target:  5'- gCGGCggGCCgcgaGGAGGuccaccgcGCGGCGAuGGACCa -3'
miRNA:   3'- -GCCGa-UGGa---CUUCC--------UGCCGUU-CUUGG- -5'
24104 3' -53.1 NC_005262.1 + 17192 0.67 0.809691
Target:  5'- gGGCgggAUCUGu-GGcgucuGCGGCGAGGACg -3'
miRNA:   3'- gCCGa--UGGACuuCC-----UGCCGUUCUUGg -5'
24104 3' -53.1 NC_005262.1 + 19228 0.67 0.819055
Target:  5'- cCGuGaCUGCCUGcguaucGGcCGGCGAGAACa -3'
miRNA:   3'- -GC-C-GAUGGACuu----CCuGCCGUUCUUGg -5'
24104 3' -53.1 NC_005262.1 + 23354 0.68 0.760283
Target:  5'- aCGGCcgGCgUGAAGcgcgcGGCGGCGAaGGCCc -3'
miRNA:   3'- -GCCGa-UGgACUUC-----CUGCCGUUcUUGG- -5'
24104 3' -53.1 NC_005262.1 + 24907 0.68 0.760283
Target:  5'- uCGGCcaGCC-GGAGGACgccgaggcauGGCGGGAugCg -3'
miRNA:   3'- -GCCGa-UGGaCUUCCUG----------CCGUUCUugG- -5'
24104 3' -53.1 NC_005262.1 + 27851 0.68 0.749962
Target:  5'- gGuGCUGCCgcgucGcAAGGACGGCGgcaAGGcgGCCg -3'
miRNA:   3'- gC-CGAUGGa----C-UUCCUGCCGU---UCU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.